Files in simpleaffy
Very simple high level analysis of Affymetrix data
NAMESPACE
DESCRIPTION
README
build/vignette.rds
src/simpleaffy.c
data/qcs.rda
R/get.annotation.R
R/justMAS.R
R/detection.p.val.R
R/heatmap.R
R/qc.stats.R
R/read.affy.R
R/call.exprs.R
R/zzz.R
R/pairwise.comparison.R
R/trad.scatter.plot.R
vignettes/QCandSimpleaffy.pdf
vignettes/simpleAffy.Rnw
man/read.affy.Rd
man/qc.get.array.Rd
man/setQCEnvironment.Rd
man/bg.correct.sa.Rd
man/qc.Rd
man/trad.scatter.plot.Rd
man/justMAS.Rd
man/hmap.pc.Rd
man/get.array.indices.Rd
man/hmap.colors.Rd
man/detection.p.val.Rd
man/pairwise.filter.Rd
man/get.annotation.Rd
man/all.present.in.group.Rd
man/get.array.subset.Rd
man/get.array.subset.affy.Rd
man/qc.stats.Rd
man/hmap.eset.Rd
man/plot.qc.stats.Rd
man/journalpng.Rd
man/QCStats-class.Rd
man/qc.ok.Rd
man/all.present.Rd
man/get.fold.change.and.t.test.Rd
man/call.exprs.Rd
man/simpleaffy-deprecated.Rd
man/qc.affy.Rd
man/qc.have.params.Rd
man/read.affy.mixed.Rd
man/qc.get.probes.Rd
man/PairComp-class.Rd
man/pairwise.comparison.Rd
man/qc.get.alpha1.Rd
man/qc.read.file.Rd
man/plot.pairwise.comparison.Rd
man/standard.pearson.Rd
man/qc.get.spikes.Rd
man/qc.get.ratios.Rd
inst/doc/simpleAffy.R
inst/doc/simpleAffy.pdf
inst/doc/simpleAffy.Rnw
inst/extdata/mu11ksubacdf.qcdef
inst/extdata/zebrafishcdf.qcdef
inst/extdata/hgu95ecdf.qcdef
inst/extdata/hgu95dcdf.qcdef
inst/extdata/hgu133acdf.qcdef
inst/extdata/hcg110cdf.qcdef
inst/extdata/hgu133a2cdf.qcdef
inst/extdata/rgu34acdf.qcdef
inst/extdata/hgu95bcdf.qcdef
inst/extdata/moe430acdf.qcdef
inst/extdata/mgu74bv2cdf.qcdef
inst/extdata/porcinecdf.qcdef
inst/extdata/soybeancdf.qcdef
inst/extdata/poplarcdf.qcdef
inst/extdata/drosgenome1cdf.qcdef
inst/extdata/mu11ksubbcdf.qcdef
inst/extdata/rae230bcdf.qcdef
inst/extdata/hgu133bcdf.qcdef
inst/extdata/mgu74ccdf.qcdef
inst/extdata/ygs98cdf.qcdef
inst/extdata/hgfocuscdf.qcdef
inst/extdata/mgu74av2cdf.qcdef
inst/extdata/mouse430b2cdf.qcdef
inst/extdata/rgu34bcdf.qcdef
inst/extdata/atgenomecdf.qcdef
inst/extdata/hgu95ccdf.qcdef
inst/extdata/mgu74bcdf.qcdef
inst/extdata/mgu74acdf.qcdef
inst/extdata/hgu95acdf.qcdef
inst/extdata/celeganscdf.qcdef
inst/extdata/ath1121501cdf.qcdef
inst/extdata/rgu34ccdf.qcdef
inst/extdata/rat2302cdf.qcdef
inst/extdata/mouse4302cdf.qcdef
inst/extdata/hgu133atagcdf.qcdef
inst/extdata/rhesuscdf.qcdef
inst/extdata/hgu133plus2cdf.qcdef
inst/extdata/yeast2cdf.qcdef
inst/extdata/rae230acdf.qcdef
inst/extdata/hgu95av2cdf.qcdef
inst/extdata/vitisviniferacdf.qcdef
inst/extdata/mouse430a2cdf.qcdef
inst/extdata/mgu74cv2cdf.qcdef
