Description Usage Arguments Value Examples
View source: R/ggPerQCWrapper.R
A wrapper function which visualizes outputs from the runEmptyDrops function stored in the colData slot of the SingleCellExperiment object via plots.
1 2 3 4 5 6 7 8 9 10 | plotBarcodeRankDropsResults(
inSCE,
sample = NULL,
defaultTheme = TRUE,
dotSize = 1,
titleSize = 18,
axisLabelSize = 18,
axisSize = 15,
legendSize = 15
)
|
inSCE |
Input SingleCellExperiment object with saved dimension reduction components or a variable with saved results from runBarcodeRankDrops. Required. |
sample |
Character vector. Indicates which sample each cell belongs to. Default NULL. |
defaultTheme |
Removes grid in plot and sets axis title size to 10 when TRUE. Default TRUE. |
dotSize |
Size of dots. Default 1. |
titleSize |
Size of title of plot. Default 18. |
axisLabelSize |
Size of x/y-axis labels. Default 18. |
axisSize |
Size of x/y-axis ticks. Default 15. |
legendSize |
size of legend. Default 15. |
list of .ggplot objects
1 2 3 | data(scExample, package="singleCellTK")
sce <- runBarcodeRankDrops(inSCE=sce)
plotBarcodeRankDropsResults(inSCE=sce)
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.