reportDiffExp: Get runDEAnalysis .html report

In singleCellTK: Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data

Description

A function to generate .html Rmarkdown report containing the visualizations of the runDEAnalysis function output

Usage

reportDiffExp(inSCE, study, output_file = NULL, output_dir = NULL)

Arguments

inSCE	A SingleCellExperiment object containing the output from runDEAnalysis function
study	The specific analysis to visualize, used as analysisName argument when running differential expression.
output_file	name of the generated file. If NULL then the output file name will be based on the name of the Rmarkdown template. Default NULL.
output_dir	name of the output directory to save the rendered file. If NULL the file is stored to the current working directory. Default NULL.

Value

.html file

singleCellTK documentation built on Nov. 8, 2020, 5:21 p.m.