scater_logNormCounts: scater_logNormCounts Uses logNormCounts to log normalize...
In singleCellTK: Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data

scater_logNormCounts Uses logNormCounts to log normalize input data

scater_logNormCounts(
  inSCE,
  logAssayName = "ScaterLogNormCounts",
  useAssay = "counts"
)

`inSCE`	Input SingleCellExperiment object
`logAssayName`	New assay name for log normalized data
`useAssay`	Input assay

inSCE Updated SingleCellExperiment object that contains the new log normalized data

Irzam Sarfraz

1 2	data(sce_chcl, package = "scds") sce_chcl <- scater_logNormCounts(sce_chcl,"logcounts", "counts")

singleCellTK documentation built on Nov. 8, 2020, 5:21 p.m.

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