seuratNormalizeData: seuratNormalizeData Wrapper for NormalizeData() function from...

Description Usage Arguments Value Examples

View source: R/seuratFunctions.R

Description

seuratNormalizeData Wrapper for NormalizeData() function from seurat library Normalizes the sce object according to the input parameters

Usage

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seuratNormalizeData(
  inSCE,
  useAssay,
  normAssayName = "seuratNormData",
  normalizationMethod = "LogNormalize",
  scaleFactor = 10000
)

Arguments

inSCE

(sce) object to normalize

useAssay

Assay containing raw counts to use for normalization.

normAssayName

Name of new assay containing normalized data. Default seuratNormData.

normalizationMethod

selected normalization method. Default "LogNormalize".

scaleFactor

numeric value that represents the scaling factor. Default 10000.

Value

Normalized SingleCellExperiment object

Examples

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data(scExample, package = "singleCellTK")
## Not run: 
sce <- seuratNormalizeData(sce, useAssay = "counts")

## End(Not run)

singleCellTK documentation built on Nov. 8, 2020, 5:21 p.m.