singleCellTK: Run the single cell analysis app
In singleCellTK: Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data

Description Usage Arguments Value Examples

Use this function to run the single cell analysis app.

1	singleCellTK(inSCE = NULL, includeVersion = TRUE, theme = "yeti")

`inSCE`	Input SingleCellExperiment object.
`includeVersion`	Include the version number in the SCTK header. The default is TRUE.
`theme`	The bootswatch theme to use for the singleCellTK UI. The default is 'flatly'.

The shiny app will open

#Upload data through the app
if(interactive()){
  singleCellTK()
}

# Load the app with a SingleCellExperiment object
if(interactive()){
  data("mouseBrainSubsetSCE")
  singleCellTK(mouseBrainSubsetSCE)
}