kersplatEstLib: Estimate Kersplat library size parameters
In splatter: Simple Simulation of Single-cell RNA Sequencing Data

Description Usage Arguments Details Value

Estimate the library size parameters for the Kersplat simulation

1	kersplatEstLib(counts, params, verbose)

`counts`	counts matrix.
`params`	KersplatParams object to store estimated values in.
`verbose`	logical. Whether to print progress messages

Parameters for the log-normal distribution are estimated by fitting the library sizes using fitdist. All the fitting methods are tried and the fit with the best Cramer-von Mises statistic is selected. The density of the library sizes is also estimated using density.

KersplatParams object with library size parameters

splatter documentation built on Dec. 3, 2020, 2:01 a.m.