kersplatSimCounts: Simulate Kersplat final counts
In splatter: Simple Simulation of Single-cell RNA Sequencing Data

Description Usage Arguments Details Value See Also

Simulate the final counts matrix for a Kersplat simulation

1	kersplatSimCounts(sim, params, verbose)

`sim`	SingleCellExperiment containing simulation.
`params`	KersplatParams object with simulation parameters.
`verbose`	logical. Whether to print progress messages

The cell counts matrix and ambient counts matrix are added together. The result is then downsampled to the cell library size (for cells and doublets) or the ambient library size (for empty cells) using the downsampleMatrix function.

SingleCellExperiment with counts matrix

downsampleMatrix

splatter documentation built on Dec. 3, 2020, 2:01 a.m.