Files in splatter
Simple Simulation of Single-cell RNA Sequencing Data
LICENSE
NAMESPACE
DESCRIPTION
README.md
tests/testthat.R
tests/spelling.R
tests/testthat/test-PhenoParams.R
tests/testthat/test-SimpleParams.R
tests/testthat/test-utils.R
tests/testthat/test-simpleEstimate.R
tests/testthat/test-BASiCSParams.R
tests/testthat/test-MFAParams.R
tests/testthat/test-SCDDParams.R
tests/testthat/test-simple-simulate.R
tests/testthat/test-mfa-simulate.R
tests/testthat/test-splatPopEstimate.R
tests/testthat/test-lun2-simulate.R
tests/testthat/test-SplatPopParams.R
tests/testthat/test-Params.R
tests/testthat/test-MFAEstimate.R
tests/testthat/test-SparseDCParams.R
tests/testthat/test-SCE-functions.R
tests/testthat/test-LunParams.R
tests/testthat/test-BASiCSEstimate.R
tests/testthat/test-Lun2Params.R
tests/testthat/test-lunEstimate.R
tests/testthat/test-ZINBParams.R
tests/testthat/test-BASiCS-simulate.R
tests/testthat/test-pheno-simulate.R
tests/testthat/test-listSims.R
tests/testthat/test-sparseDCEstimate.R
tests/testthat/test-splat-simulate.R
tests/testthat/test-lun-simulate.R
tests/testthat/test-SplatParams.R
tests/testthat/test-scDD-simulate.R
tests/testthat/test-kersplat-simulate.R
tests/testthat/test-zinb-simulate.R
tests/testthat/test-sparseDC-simulate.R
tests/testthat/test-splatPop-simulate.R
tests/testthat/test-phenoEstimate.R
tests/testthat/test-compare.R
R/mock-data.R
R/sparseDC-simulate.R
R/splat-simulate.R
R/LunParams-methods.R
R/Lun2Params-methods.R
R/zinb-simulate.R
R/PhenoParams-methods.R
R/splat-estimate.R
R/SCE-functions.R
R/utils.R
R/MFAParams-methods.R
R/AllClasses.R
R/mfa-estimate.R
R/simple-simulate.R
R/simple-estimate.R
R/lun2-simulate.R
R/BASiCS-estimate.R
R/params-functions.R
R/sparseDC-estimate.R
R/SplatParams-methods.R
R/scDD-estimate.R
R/lun2-estimate.R
R/SCDDParams-methods.R
R/BASiCSParams-methods.R
R/AllGenerics.R
R/Params-methods.R
R/kersplat-simulate.R
R/zinb-estimate.R
R/splatPop-simulate.R
R/lun-simulate.R
R/SimpleParams-methods.R
R/pheno-estimate.R
R/compare.R
R/scDD-simulate.R
R/lun-estimate.R
R/KersplatParams-methods.R
R/BASiCS-simulate.R
R/SplatPopParams-methods.R
R/ZINBParams-methods.R
R/kersplat-estimate.R
R/mfa-simulate.R
R/splatPop-estimate.R
R/splatter-package.R
R/SparseDCParams-methods.R
R/pheno-simulate.R
R/listSims.R
man/phenoSimulate.Rd
man/splatPopeQTLEffects.Rd
man/splatSimBCVMeans.Rd
man/summariseDiff.Rd
man/makeDiffPanel.Rd
man/kersplatEstLib.Rd
man/checkDependencies.Rd
man/sparsifyMatrices.Rd
man/logistic.Rd
man/sparseDCEstimate.Rd
man/bringItemsForward.Rd
man/kersplatGenNetwork.Rd
man/kersplatSample.Rd
man/addFeatureStats.Rd
man/lun2Estimate.Rd
man/splatPopEstimateEffectSize.Rd
man/splatSimBatchEffects.Rd
man/splatPopQuantNormKey.Rd
man/splatPopCleanSCE.Rd
man/getParams.Rd
man/splatPopSimulateSC.Rd
man/setParamUnchecked.Rd
man/splatPopSimMeans.Rd
man/diffSCEs.Rd
man/mfaSimulate.Rd
man/simpleSimulate.Rd
man/tidyStatSumm.Rd
man/co.var.Rd
man/mockBulkMatrix.Rd
man/summariseKS.Rd
man/splatPopParseVCF.Rd
man/summariseStats.Rd
man/splatEstLib.Rd
man/addGeneLengths.Rd
man/splatPopEstimate.Rd
man/splatPopQuantNorm.Rd
man/BASiCSSimulate.Rd
man/getLNormFactors.Rd
man/getParam.Rd
man/getCounts.Rd
man/compareSCEs.Rd
man/ZINBParams.Rd
man/SplatPopParams.Rd
man/selectFit.Rd
man/kersplatSimCellCounts.Rd
man/splatSimTrueCounts.Rd
man/minimiseSCE.Rd
man/SplatParams.Rd
man/splatSimulate.Rd
man/kersplatSimLibSizes.Rd
man/expandParams.Rd
man/splatPopSimEffects.Rd
man/setParam.Rd
man/setParamsUnchecked.Rd
man/lunEstimate.Rd
man/PhenoParams.Rd
man/kersplatSimPaths.Rd
man/splatEstBCV.Rd
man/lun2Simulate.Rd
man/kersplatSetup.Rd
man/mockVCF.Rd
man/zinbSimulate.Rd
man/kersplatSelectRegs.Rd
man/splatPopAssignMeans.Rd
man/showDFs.Rd
man/makeCompPanel.Rd
man/LunParams.Rd
man/kersplatSimulate.Rd
man/getPathOrder.Rd
man/splatSimCellMeans.Rd
man/splatEstimate.Rd
man/SimpleParams.Rd
man/showPP.Rd
man/newParams.Rd
man/rbindMatched.Rd
man/splatPopSimulateMeans.Rd
man/showValues.Rd
man/bridge.Rd
man/mockBulkeQTL.Rd
man/scDDEstimate.Rd
man/mfaEstimate.Rd
man/kersplatEstBCV.Rd
man/MFAParams.Rd
man/splatEstMean.Rd
man/splatPopSimulateSample.Rd
man/splatPopSimulate.Rd
man/splatSimBatchCellMeans.Rd
man/splatter.Rd
man/splatSimLibSizes.Rd
man/kersplatSimAmbientCounts.Rd
man/sparseDCSimulate.Rd
man/sampleDensity.Rd
man/BASiCSParams.Rd
man/splatPopSimGeneMeans.Rd
man/lunSimulate.Rd
man/winsorize.Rd
man/mockGFF.Rd
man/splatSimGeneMeans.Rd
man/simpleEstimate.Rd
man/kersplatEstimate.Rd
man/splatSimDE.Rd
man/getBetaStepProbs.Rd
man/kersplatSimGeneMeans.Rd
man/splatPopParseGenes.Rd
man/splatEstDropout.Rd
man/listSims.Rd
man/scDDSimulate.Rd
man/kersplatEstMean.Rd
man/kersplatSimCellMeans.Rd
man/setParams.Rd
man/BASiCSEstimate.Rd
man/Lun2Params.Rd
man/kersplatSimCounts.Rd
man/KersplatParams.Rd
man/makeOverallPanel.Rd
man/Params.Rd
man/zinbEstimate.Rd
man/splatPopEstimateMeanCV.Rd
man/splatEstOutlier.Rd
man/SCDDParams.Rd
man/splatPopGroupEffects.Rd
man/splatSimDropout.Rd
man/phenoEstimate.Rd
man/SparseDCParams.Rd
inst/CITATION
inst/WORDLIST
inst/NEWS.Rd
inst/doc/splatter.R
inst/doc/splatPop.Rmd
inst/doc/splatPop.html
inst/doc/splat_params.Rmd
inst/doc/splat_params.R
inst/doc/splat_params.html
inst/doc/splatter.html
inst/doc/splatPop.R
inst/doc/splatter.Rmd
build/vignette.rds
vignettes/splat-model.png
vignettes/splatPop.Rmd
vignettes/splat_params.Rmd
vignettes/splatter-logo-small.png
vignettes/splatPop-logo-small.png
vignettes/splatter.Rmd
vignettes/splatPop-model.png
