PhenoParams: The PhenoParams class

In splatter: Simple Simulation of Single-cell RNA Sequencing Data

Description

S4 class that holds parameters for the PhenoPath simulation.

Parameters

The PhenoPath simulation uses the following parameters:

nGenes

The number of genes to simulate.

nCells

The number of cells to simulate.

[seed]

Seed to use for generating random numbers.

[n.de]

Number of genes to simulate from the differential expression regime

[n.pst]

Number of genes to simulate from the pseudotime regime

[n.pst.beta]

Number of genes to simulate from the pseudotime + beta interactions regime

[n.de.pst.beta]

Number of genes to simulate from the differential expression + pseudotime + interactions regime

The parameters not shown in brackets can be estimated from real data using phenoEstimate. For details of the PhenoPath simulation see phenoSimulate.

splatter documentation built on Dec. 3, 2020, 2:01 a.m.