kersplatSimAmbientCounts: Simulate Kersplat ambient counts
In splatter: Simple Simulation of Single-cell RNA Sequencing Data
Description
Usage
Arguments
Details
Value
View source: R/kersplat-simulate.R
Description
Simulate Kersplat ambient counts
Usage
1
kersplatSimAmbientCounts(sim, params, verbose)
Arguments
sim
SingleCellExperiment containing simulation.
params
KersplatParams object with simulation parameters.
verbose
logical. Whether to print progress messages
Details
The overall expression profile to calculated by averaging the cell counts
of the (non-empty) cells. This is then multiplied by the ambient library
sizes to get a mean for each cell. Counts are then sampled from a Poisson
distribution using these means.
Value
SingleCellExperiment with ambient counts
splatter documentation built on Dec. 3, 2020, 2:01 a.m.
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Description Usage Arguments Details Value
View source: R/kersplat-simulate.R
Description
Simulate Kersplat ambient counts
Usage
1 | kersplatSimAmbientCounts(sim, params, verbose)
|
Arguments
sim |
SingleCellExperiment containing simulation. |
params |
KersplatParams object with simulation parameters. |
verbose |
logical. Whether to print progress messages |
Details
The overall expression profile to calculated by averaging the cell counts of the (non-empty) cells. This is then multiplied by the ambient library sizes to get a mean for each cell. Counts are then sampled from a Poisson distribution using these means.
Value
SingleCellExperiment with ambient counts
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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