splatSimDropout: Simulate dropout
In splatter: Simple Simulation of Single-cell RNA Sequencing Data
Description
Usage
Arguments
Value
View source: R/splat-simulate.R
Description
A logistic function is used to form a relationship between the expression
level of a gene and the probability of dropout, giving a probability for each
gene in each cell. These probabilities are used in a Bernoulli distribution
to decide which counts should be dropped.
Usage
1
splatSimDropout(sim, params)
Arguments
sim
SingleCellExperiment to add dropout to.
params
SplatParams object with simulation parameters.
Value
SingleCellExperiment with simulated dropout and observed counts.
splatter documentation built on Dec. 3, 2020, 2:01 a.m.
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Description Usage Arguments Value
View source: R/splat-simulate.R
Description
A logistic function is used to form a relationship between the expression level of a gene and the probability of dropout, giving a probability for each gene in each cell. These probabilities are used in a Bernoulli distribution to decide which counts should be dropped.
Usage
1 | splatSimDropout(sim, params)
|
Arguments
sim |
SingleCellExperiment to add dropout to. |
params |
SplatParams object with simulation parameters. |
Value
SingleCellExperiment with simulated dropout and observed counts.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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