splatPopParseVCF: Format and subset genotype data from a VCF file.

In splatter: Simple Simulation of Single-cell RNA Sequencing Data

Description

Extract numeric alleles from vcf object and filter out SNPs missing genotype data or outside the Minor Allele Frequency range in 'SplatPopParams'.

Usage

splatPopParseVCF(vcf, params)

Arguments

vcf	VariantAnnotation object containing genotypes of samples.
params	SplatPopParams object containing parameters for population scale simulations. See SplatPopParams for details.

Value

Genotype data.frame

splatter documentation built on Dec. 3, 2020, 2:01 a.m.