splatPopSimGeneMeans: Simulate gene means for splatPop
In splatter: Simple Simulation of Single-cell RNA Sequencing Data
Description
Usage
Arguments
Value
View source: R/splatPop-simulate.R
Description
Simulate outlier expression factors for splatPop. Genes with an outlier
factor not equal to 1 are replaced with the median mean expression
multiplied by the outlier factor.
Usage
1
splatPopSimGeneMeans(sim, params, base.means.gene)
Arguments
sim
SingleCellExperiment to add gene means to.
params
SplatParams object with simulation parameters.
base.means.gene
List of gene means for sample from matrix
generated by 'splatPopSimulateMeans' and with the sample specified
in 'splatPopSimulateSC'.
Value
SingleCellExperiment with simulated gene means.
splatter documentation built on Dec. 3, 2020, 2:01 a.m.
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Description Usage Arguments Value
View source: R/splatPop-simulate.R
Description
Simulate outlier expression factors for splatPop. Genes with an outlier factor not equal to 1 are replaced with the median mean expression multiplied by the outlier factor.
Usage
1 | splatPopSimGeneMeans(sim, params, base.means.gene)
|
Arguments
sim |
SingleCellExperiment to add gene means to. |
params |
SplatParams object with simulation parameters. |
base.means.gene |
List of gene means for sample from matrix generated by 'splatPopSimulateMeans' and with the sample specified in 'splatPopSimulateSC'. |
Value
SingleCellExperiment with simulated gene means.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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