tidybulk: Brings transcriptomics to the tidyverse

This is a collection of utility functions that allow to perform exploration of and calculations to RNA sequencing data, in a modular, pipe-friendly and tidy fashion.

README.md Comparison with base R Manuscript code - differential transcript abundance Manuscript code - transcriptional signature identification Overview of the tidybulk package

Vignettes Man pages API and functions Files

Package details
Author	Stefano Mangiola [aut, cre], Maria Doyle [ctb]
Bioconductor views	AssayDomain Clustering DifferentialExpression GeneExpression Infrastructure Normalization QualityControl RNASeq Sequencing Transcription Transcriptomics
Maintainer	Stefano Mangiola <mangiolastefano@gmail.com>
License	GPL-3
Version	1.2.1
Package repository	View on Bioconductor
Installation	Install the latest version of this package by entering the following in R: `if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("tidybulk")`