wateRmelon
Illumina 450 methylation array normalization and metrics

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Functions
293
Source code
76
Man pages
39
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wateRmelon: Illumina 450 methylation array normalization and metrics
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API

API for wateRmelon
Illumina 450 methylation array normalization and metrics

Global functions
.getManifestString Source code
.impose Source code
.normalizeQuantiles2 Source code
BMIQ Man page Source code
BMIQ,ANY-method Man page
BMIQ,MethyLumiSet-method Man page
BMIQ,MethylSet-method Man page
BMIQ-methods Man page
Beta2M Man page
CheckBMIQ Man page Source code
DataToNChannelSet2 Man page Source code
IDATsToMatrices2 Man page Source code
IDATtoMatrix2 Man page Source code
M2Beta Man page
NChannelSetToMethyLumiSet2 Man page Source code
adaptRefQuantiles Man page Source code
agep Man page Source code
agep,MethyLumiSet-method Man page
agep,MethylSet-method Man page
anSNP Man page Source code
anti.trafo Man page Source code
aoget Man page Source code Source code
as.methylumi Man page Source code
as.methylumi,ANY-method Man page
as.methylumi,MethyLumiSet-method Man page
as.methylumi,MethylSet-method Man page
as.methylumi-methods Man page
beadc Man page Source code
beadcount Man page Source code
betaqn Man page Source code
betaqn,MethyLumiSet-method Man page
betaqn,MethylSet-method Man page
betaqn,RGChannelSet-method Man page
betaqn,exprmethy450-method Man page
bfp Man page Source code
bgIntensitySwan.methylumi Man page
bscon Man page Source code
bscon,MethyLumiSet-method Man page
bscon,RGChannelSet-method Man page
bscon_methy Man page Source code
bscon_minfi Man page Source code
coRankedMatrices Man page Source code
coef Man page
colnames,MethyLumiSet-method Man page
colnames-methods Man page
columnMatrix Man page Source code
combo Man page
concatenateMatrices Man page Source code
correctI Man page
correctII Man page
danen Man page
danen,MethyLumiSet-method Man page
danen,MethylSet-method Man page
danen,RGChannelSet-method Man page
danes Man page Source code
danes,MethyLumiSet-method Man page
danes,MethylSet-method Man page
danes,RGChannelSet-method Man page
danet Man page Source code
danet,MethyLumiSet-method Man page
danet,MethylSet-method Man page
danet,RGChannelSet-method Man page
dasen Man page Source code
dasen,MethyLumiSet-method Man page
dasen,MethylSet-method Man page
dasen,RGChannelSet-method Man page
dataDetectPval2NA Man page Source code
daten1 Man page Source code
daten1,MethyLumiSet-method Man page
daten1,MethylSet-method Man page
daten1,RGChannelSet-method Man page
daten2 Man page Source code
daten2,MethyLumiSet-method Man page
daten2,MethylSet-method Man page
daten2,RGChannelSet-method Man page
db1 Man page Source code
designIItoMandU2 Man page Source code
designItoMandU2 Man page Source code
detectionPval.filter Man page Source code
dfort Man page Source code
dfs2 Man page Source code
dfsfit Man page Source code
dmrse Man page Source code
dmrse,MethyLumiSet-method Man page
dmrse,MethylSet-method Man page
dmrse,RGChannelSet-method Man page
dmrse,exprmethy450-method Man page
dmrse-methods Man page
dmrse_col Man page Source code
dmrse_col,MethyLumiSet-method Man page
dmrse_col,MethylSet-method Man page
dmrse_col,RGChannelSet-method Man page
dmrse_col,exprmethy450-method Man page
dmrse_col-methods Man page
dmrse_row Man page Source code
dmrse_row,MethyLumiSet-method Man page
dmrse_row,MethylSet-method Man page
dmrse_row,RGChannelSet-method Man page
dmrse_row,exprmethy450-method Man page
dmrse_row-methods Man page
epic.controls Man page
estimateCellCounts.wmln Man page Source code
extractAssayDataFromList2 Man page Source code
filterXY Man page Source code
findAnnotationProbes Man page Source code
fot Man page Source code
fuks Man page
fuks,MethyLumiSet-method Man page
fuks,MethylSet-method Man page
fuks,RGChannelSet-method Man page
fuks,exprmethy450-method Man page
gcoms Man page Source code
gcose Man page Source code
genall Man page Source code
generateManifest Man page Source code
genki Man page Source code
genki,MethyLumiSet-method Man page
genki,MethylSet-method Man page
genki,RGChannelSet-method Man page
genki,exprmethy450-method Man page
genki-methods Man page
genkme Man page Source code
genkus Man page Source code
genme Man page
genus Man page Source code
getColumns Man page
getControlProbes2 Man page Source code
getMethylationBeadMappers2 Man page Source code
getMethylumiBeta Man page Source code
getQuantiles Man page Source code
getSamples Man page Source code
getsnp Man page Source code
goodSNP Man page Source code
got Man page Source code
hannumCoef Man page
iDMR Man page
iqrFun Man page Source code
loadMethylumi2 Man page Source code
lumiMethyR2 Man page
melon Man page
mergeProbeDesigns2 Man page Source code
methylumIDATepic Man page
metrics Man page Source code
mvFun Man page Source code
nanes Man page Source code
nanes,MethyLumiSet-method Man page
nanes,MethylSet-method Man page
nanes,RGChannelSet-method Man page
nanet Man page Source code
nanet,MethyLumiSet-method Man page
nanet,MethylSet-method Man page
nanet,RGChannelSet-method Man page
nasen Man page
nasen,MethyLumiSet-method Man page
nasen,MethylSet-method Man page
nasen,RGChannelSet-method Man page
naten Man page
naten,MethyLumiSet-method Man page
naten,MethylSet-method Man page
naten,RGChannelSet-method Man page
nbBeadsFilter Man page Source code
normalize.quantiles2 Man page Source code
normalizeIlluminaMethylation Man page Source code
outlyx Man page Source code
outlyx,MethyLumiSet-method Man page
outlyx,MethylSet-method Man page
outlyx,RGChannelSet-method Man page
oxyscale Man page
pcouted Man page Source code
pfilter Man page
pfilter,MethyLumiSet-method Man page
pfilter,RGChannelSetExtended-method Man page
pfilter-methods Man page
pipelineIlluminaMethylation.batch Man page Source code
pop Man page
predictSex Man page Source code
preprocessIlluminaMethylation Man page Source code
pwod Man page Source code
pwod,MethyLumiSet-method Man page
pwod,MethylSet-method Man page
pwod,RGChannelSet-method Man page
qual Man page Source code
readEPIC Man page Source code
referenceQuantiles Man page Source code
robustQuantileNorm_Illumina450K Man page Source code
robustQuantileNorm_Illumina450K.probeCategories Man page Source code
seabi Man page
seabi,MethyLumiSet-method Man page
seabi,MethylSet-method Man page
seabi,RGChannelSet-method Man page
seabi,exprmethy450-method Man page
seabi-methods Man page
seabird Man page Source code
sextest Man page Source code
summits Man page
swan Man page
swan,MethyLumiSet-method Man page
swan,MethylSet-method Man page
swan,RGChannelSet-method Man page
tost Man page Source code
tost,MethyLumiSet-method Man page
tost,MethylSet-method Man page
tost,RGChannelSet-method Man page
trafo Man page Source code
uniqueAnnotationCategory Man page Source code
wateRmelon Man page
wateRmelon-package Man page
wateRmelon documentation built on Nov. 8, 2020, 7:47 p.m.

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