RealValET_conservativity: Calculate real-value Evolutionary Trace (ET)

Description Usage Arguments Details Value Author(s) References Examples

Description

This function allows to calculate real-valued ET for MSA.

Usage

1

Arguments

alignment

Alignment data read with read.alignment() function

Details

Here, the real-valued ET is calculated using an evolutionary tree calculated for given alignment. The tree is calculated using UPGMA method. Real-valued ET score can be used as complimentary analysis of evolutionary entropy measures.

Value

\ itemxA vector of real valued ET score corresponding to each MSA column

Author(s)

Alicja Plucennik & Michal Stolarczyk

References

Mihalek, Res, Lichtarge, 2004

Examples

1
2
3

BALCONY documentation built on May 1, 2019, 10:31 p.m.