gonnet: Gonnet substitution matrix

In BALCONY: Better ALignment CONsensus analYsis

Description

This dataset comprises the Gonnet substitution matrix which facilitates e.g. the calculation of Landgraf conservation score

Usage

data("gonnet")

Format

A data frame with 0 observations on the following 2 variables.

AA names

Names of amino acids included in the matrix

matrix

The substitution matrix itself

Source

http://imed.med.ucm.es/Tools/sias_help.html

Examples

data("gonnet")

Example output

Warning messages:
1: In rgl.init(initValue, onlyNULL) : RGL: unable to open X11 display
2: 'rgl_init' failed, running with rgl.useNULL = TRUE 
3: .onUnload failed in unloadNamespace() for 'rgl', details:
  call: fun(...)
  error: object 'rgl_quit' not found 

BALCONY documentation built on May 1, 2019, 10:31 p.m.