find_seqid: Find sequence identifier by other sequence identifier in...
In BALCONY: Better ALignment CONsensus analYsis

Description Usage Arguments Value Author(s) Examples

This function allows to find sequence id from alignment file corresponding to the given sequence id. Function requires library of equivalent sequences id defined by user and it is useful to find sequences from other databases in alignment for examined sequence from other database (like PDB sequence for structure and UniProt sequences in alignment).

1	find_seqid(sequence_id, library)

`sequence_id`	A string. An ID of e.g. PDB structure identifier
`library`	A list of vectors which contain a defined by user library e.g. of UniProt ids <-> PDB ids. See examples

seqid

A string. The equivalent ID to the one provided as the input.

Alicja Pluciennik & Michal Stolarczyk

#creating library uniprot - PDB
lib=list(  c("Q84HB8","4I19","4QA9"),
  c("P34913","4JNC"),
  c("P34914","1EK2","1CR6","1EK1","1CQZ"))
PDB_name = "1CQZ"
find_seqid(PDB_name,lib)