prepare_structure_profile: This function combines the entropy data for structure...

Description Usage Arguments Value Author(s) Examples

Description

This function combines the entropy data for structure building amino acids with its indices. It prepares the data for convenient visualization or processing.

Usage

1

Arguments

structure

A structure data, the output of create_structure_seq function

structure_entropy

The entropy values for the structure building residues, the output of get_structures_entropy function

Value

List of structures

Each element is a list of entropy values (matrix of entropy scores) and indices of residues building structure in protein of interest.

Author(s)

Alicja Pluciennik & Michal Stolarczyk

Examples

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data("alignment")
data("structure")
uniprot="P34914"
indices=get_structures_idx(structure)
protein_index = indices$proteinIndices
structure_index = indices$structureIndices
entropy_scores_list=list(Schneider_entropy = schneider_conservativity(alignment),
                        Escore_entropy = Escore_conservativity(alignment))
structure_entropy=get_structures_entropy(structure_index, entropy_scores_list)
structure_profile = prepare_structure_profile(structure, structure_entropy)

BALCONY documentation built on May 1, 2019, 10:31 p.m.