alignment2matrix: Load alignment into matrix
In BALCONY: Better ALignment CONsensus analYsis

Description Usage Arguments Value Author(s) See Also Examples

The function loads alignment into matrix to facilitate a convenient data manipulation

1	alignment2matrix(alignment)

alignment

data loaded with read.alignment function

matrix

Aligned sequences matrix where number of rows equals to number of aligned sequences and number of columns equals to the length length of aligned sequences

Alicja Pluciennik & Michal Stolarczyk

align_params, read.alignment

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data("alignment")
alignment = delete_isoforms(alignment)
matrix=alignment2matrix(alignment)

Warning messages:
1: In rgl.init(initValue, onlyNULL) : RGL: unable to open X11 display
2: 'rgl.init' failed, running with 'rgl.useNULL = TRUE'. 
Warning message:
In delete_isoforms(alignment) : 4 isoforms were deleted