post_data: Save Reviewer Annotations

In CEDARS: Simple and Efficient Pipeline for Electronic Health Record Annotation

Description

Saves sentence review status and event time about an individual for whom the electronic health record text was reviewed. Main way for end user to enter data into CEDARS.

Usage

post_data(
  uri_fun,
  user,
  password,
  host,
  port,
  database,
  end_user,
  end_user_password,
  position,
  event_date,
  pt_comments,
  ldap = FALSE
)

Arguments

uri_fun	Uniform resource identifier (URI) string generating function for MongoDB credentials.
user	MongoDB user name.
password	MongoDB user password.
host	MongoDB host server.
port	MongoDB port.
database	MongoDB database name.
end_user	CEDARS end user name.
end_user_password	CEDARS end user password.
position	Sentence position within the sequence of selected sentences for a given patient.
event_date	Date of clinical event as determined by human reviewer.
pt_comments	Patient-specific comments from the reviewer.
ldap	Is LDAP authentication being used? If so, password will not be checked and access will be granted automatically.

CEDARS documentation built on Feb. 7, 2021, 5:06 p.m.