select_patient: Select Next Patient to Review

In CEDARS: Simple and Efficient Pipeline for Electronic Health Record Annotation

Description

Selects next available patient to review by CEDARS end user. If a patient record is already locked it will be used, otherwise next in line is choosen. If a specific patinet ID was requested, record will be locked and selected.

Usage

select_patient(
  uri_fun,
  user,
  password,
  host,
  port,
  database,
  end_user,
  patient_id = NA
)

Arguments

uri_fun	Uniform resource identifier (URI) string generating function for MongoDB credentials.
user	MongoDB user name.
password	MongoDB user password.
host	MongoDB host server.
port	MongoDB port.
database	MongoDB database name.
end_user	CEDARS end user name.
patient_id	Used if a specific patient record is requested, instead of a search for next record to annotate.

Value

Selected patient_id.

CEDARS documentation built on Feb. 7, 2021, 5:06 p.m.