Man pages for EHR
Electronic Health Record (EHR) Data Processing and Analysis Tool

addLastDoseAdd Lastdose Data
analysisPheWASStatistical Analysis for PheWAS
buildDoseCombine Dose Data
build-internalInternal functions for buildDose process
build_lastdosePK oral functions
collapseDoseCollapse Dose Data
collapse-internalInternal functions for collapseDose process
dataTransformationData Transformation
dddd
dd.baselinedd.baseline
dd.baseline.smalldd.baseline.small
dd.smalldd.small
EHR-packageElectronic Health Record (EHR) Data Processing and Analysis...
extractMedExtract medication information from clinical notes
extractMed-internalInternal functions for Extract-Med module
freqNumConvert Character Frequency to Numeric
idCrosswalkCreate ID Crosswalk
lam_metadataExample of Metadata for Lamotrigine Data
lam_mxr_parsedExample of Lamotrigine Output from 'parseMedExtractR'
lastdose-internalInternal functions for lastdose
LogistfFirth's penalized-likelihood logistic regression with more...
makeDoseMake Dose Data
mod-internalInternal functions for EHR modules
parseCLAMPParse CLAMP NLP Output
parse-internalInternal functions for parse process
parseMedExParse MedEx NLP Output
parseMedExtractRParse medExtractR NLP Output
parseMedXNParse MedXN NLP Output
pk-internalInternal functions for pk analysis
processLastDoseProcess and standardize extracted last dose times
pullFakeIdPull Fake/Mod ID
pullRealIdPull Real ID
readTransformRead and Transform
run_Build_PK_IVBuild-PK-IV Module
run_Build_PK_OralBuild-PK-Oral Module
run_DemoRun Demographic Data
run_DrugLevelRun Drug Level Data
run_LabsRun Lab Data
run_MedStrIRun Str Data I
run_MedStrIIRun Structured E-Prescription Data
stdzDoseStandardize Dose Entity
stdzDoseChangeStandardize Dose Change Entity
stdzDoseScheduleStandardize Dose Schedule Entity
stdzDurationStandardize Duration Entity
stdzFreqStandardize Frequency Entity
stdzRouteStandardize Route Entity
stdzStrengthStandardize Strength Entity
tac_labExample of Lab Time Data for Tacrolimus
tac_metadataExample of Metadata for Tacrolimus Data
tac_mxr_parsedExample of Tacrolimus Output from 'parseMedExtractR'
writeCheckDataWrite Check File as CSV
zeroOneTableMake Zero One Contingency Tables
EHR documentation built on June 9, 2021, 9:07 a.m.