parse-internal: Internal functions for parse process

parse-internalR Documentation

Internal functions for parse process


These internal functions aid the main functions used in the parsing process (parseMedExtractR, parseMedXN, parseMedEx, parseCLAMP).


medxnColonFormat: converts entity information into the form "extracted expression::start position::stop position", similar to how output is formatted by default in MedXN output.

entorder: a helper function that orders the entities by start position

medxnEntityFormat: a helper function that applies both medxnColonFormat to convert entities into the "extraction::start::stop" format and entorder to sort them. It then collapses the entities and separates the extractions with backticks

EHR documentation built on Dec. 28, 2022, 1:31 a.m.