parse-internal: Internal functions for parse process

In EHR: Electronic Health Record (EHR) Data Processing and Analysis Tool

Internal functions for parse process

Description

These internal functions aid the main functions used in the parsing process (parseMedExtractR, parseMedXN, parseMedEx, parseCLAMP).

Details

medxnColonFormat: converts entity information into the form "extracted expression::start position::stop position", similar to how output is formatted by default in MedXN output.

entorder: a helper function that orders the entities by start position

medxnEntityFormat: a helper function that applies both medxnColonFormat to convert entities into the "extraction::start::stop" format and entorder to sort them. It then collapses the entities and separates the extractions with backticks

EHR documentation built on Dec. 28, 2022, 1:31 a.m.