ENMeval: Automated Runs and Evaluations of Ecological Niche Models

Automatically partitions data into evaluation bins, executes ecological niche models across a range of settings, and calculates a variety of evaluation statistics. Current version only implements ENMs with Maxent (Phillips et al. 2006).

Author
Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Uriarte and Robert P. Anderson
Date of publication
2016-01-04 16:08:51
Maintainer
Robert Muscarella <bob.muscarella@gmail.com>
License
GPL
Version
0.2.1

View on CRAN

Man pages

calc.aicc
Calculate AICc from Maxent model prediction
calc.niche.overlap
Calculate Similarity of ENMs in Geographic Space
corrected.var
Calculate variance corrected for non-independence of _k_-fold...
ENMeval-package
Automated runs and evaluations of ecological niche models
enmeval_results
An object of class "ENMevaluation"
ENMevaluate
Tuning and evaluation of ENMs with Maxent
ENMevaluation-class
Class '"ENMevaluation"'
eval.plot
Generate Basic Plot for ENMevaluate Output
get.evaluation.bins
Methods to partition data for evaluation
make.args
Generate arguments for Maxent

Files in this package

ENMeval
ENMeval/inst
ENMeval/inst/CITATION
ENMeval/NAMESPACE
ENMeval/NEWS
ENMeval/data
ENMeval/data/enmeval_results.rda
ENMeval/R
ENMeval/R/get.checkerboard2.R
ENMeval/R/make.args.R
ENMeval/R/tuning.R
ENMeval/R/calc.niche.overlap.R
ENMeval/R/ENMevaluate.R
ENMeval/R/get.block.R
ENMeval/R/get.randomkfold.R
ENMeval/R/get.jackknife.R
ENMeval/R/get.checkerboard1.R
ENMeval/R/get.user.R
ENMeval/R/get.params.R
ENMeval/R/corrected.var.R
ENMeval/R/calc.aicc.R
ENMeval/R/eval.plot.R
ENMeval/R/all.classes.R
ENMeval/MD5
ENMeval/DESCRIPTION
ENMeval/man
ENMeval/man/ENMevaluate.Rd
ENMeval/man/ENMeval-package.Rd
ENMeval/man/make.args.Rd
ENMeval/man/calc.niche.overlap.Rd
ENMeval/man/ENMevaluation-class.Rd
ENMeval/man/calc.aicc.Rd
ENMeval/man/corrected.var.Rd
ENMeval/man/eval.plot.Rd
ENMeval/man/enmeval_results.Rd
ENMeval/man/get.evaluation.bins.Rd