ENMeval: Automated Runs and Evaluations of Ecological Niche Models
Version 0.2.2

Automatically partitions data into evaluation bins, executes ecological niche models across a range of settings, and calculates a variety of evaluation statistics. Current version only implements ENMs with Maxent (Phillips et al. 2006).

AuthorRobert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Uriarte and Robert P. Anderson
Date of publication2017-01-10 10:17:38
MaintainerRobert Muscarella <bob.muscarella@gmail.com>
LicenseGPL
Version0.2.2
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("ENMeval")

Getting started

Package overview
README.md
ENMeval Vignette

Popular man pages

calc.aicc: Calculate AICc from Maxent model prediction
ENMevaluate: Tuning and evaluation of ENMs with Maxent
ENMevaluation-class: Class '"ENMevaluation"'
eval.plot: Generate Basic Plot for ENMevaluate Output
get.evaluation.bins: Methods to partition data for evaluation
make.args: Generate arguments for Maxent
var.importance: Extract percent contribution and permutation importance from...
See all...

All man pages Function index File listing

Man pages

calc.aicc: Calculate AICc from Maxent model prediction
calc.niche.overlap: Calculate Similarity of ENMs in Geographic Space
corrected.var: Calculate variance corrected for non-independence of _k_-fold...
ENMeval-package: Automated runs and evaluations of ecological niche models
enmeval_results: An object of class "ENMevaluation"
ENMevaluate: Tuning and evaluation of ENMs with Maxent
ENMevaluation-class: Class '"ENMevaluation"'
eval2: An object of class "ENMevaluation"
eval.plot: Generate Basic Plot for ENMevaluate Output
get.evaluation.bins: Methods to partition data for evaluation
make.args: Generate arguments for Maxent
var.importance: Extract percent contribution and permutation importance from...

Functions

ENMeval Man page
ENMeval-package Man page
ENMevaluate Man page Source code
ENMevaluation Man page
ENMevaluation-class Man page
calc.aicc Man page Source code
calc.niche.overlap Man page Source code
corrected.var Man page Source code
enmeval_results Man page
eval.plot Man page Source code
eval2 Man page
get.block Man page Source code
get.checkerboard1 Man page Source code
get.checkerboard2 Man page Source code
get.evaluation.bins Man page
get.jackknife Man page Source code
get.params Man page Source code
get.randomkfold Man page Source code
get.user Man page Source code
make.args Man page Source code
tuning Man page Source code
var.importance Man page Source code

Files

inst
inst/CITATION
inst/doc
inst/doc/ENMeval-vignette.html
inst/doc/ENMeval-vignette.Rmd
inst/doc/ENMeval-vignette.R
NAMESPACE
NEWS
data
data/eval2.rda
data/enmeval_results.rda
R
R/get.checkerboard2.R
R/make.args.R
R/tuning.R
R/calc.niche.overlap.R
R/ENMevaluate.R
R/get.block.R
R/get.randomkfold.R
R/var.importance.R
R/get.jackknife.R
R/get.checkerboard1.R
R/get.user.R
R/get.params.R
R/corrected.var.R
R/calc.aicc.R
R/eval.plot.R
R/all.classes.R
vignettes
vignettes/ENMeval-vignette.md
vignettes/ENMeval-vignette.Rmd
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/ENMevaluate.Rd
man/ENMeval-package.Rd
man/make.args.Rd
man/calc.niche.overlap.Rd
man/ENMevaluation-class.Rd
man/calc.aicc.Rd
man/var.importance.Rd
man/corrected.var.Rd
man/eval.plot.Rd
man/enmeval_results.Rd
man/eval2.Rd
man/get.evaluation.bins.Rd
ENMeval documentation built on May 19, 2017, 2:32 p.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.