Man pages for ENMeval
Automated Tuning and Evaluations of Ecological Niche Models
| aic.maxent | Calculate AICc from Maxent model prediction |
| buildRMM | Build metadata object from ENMeval results |
| bvariegatus | Example occurrence dataset. |
| calc.10p.trainThresh | Calculate 10 percentile threshold |
| calc.niche.overlap | Calculate Similarity of ENMs in Geographic Space |
| clamp.vars | Clamp predictor variables |
| corrected.var | Corrected variance function |
| emp.bg | emp.bg generic for ENMnull object |
| emp.bg.grp | emp.bg.grp generic for ENMnull object |
| emp.occs | emp.occs generic for ENMnull object |
| emp.occs.grp | emp.occs.grp generic for ENMnull object |
| enm.args | enm.args generic for ENMdetails object |
| enm.bioclim | ENMdetails bioclim |
| ENMdetails | ENMdetails class |
| enm.errors | enm.errors generic for ENMdetails object |
| ENMeval-package | Automated runs and evaluations of ecological niche models |
| enmeval_results | Example ENMevaluation object. |
| ENMevaluate | Tune ecological niche model (ENM) settings and calculate... |
| ENMevaluation | ENMevaluation class |
| ENMevaluation_convert | Convert old ENMevaluation objects to new ones |
| enm.fun | enm.fun generic for ENMdetails object |
| enm.maxent.jar | ENMdetails maxent.jar |
| enm.maxnet | ENMdetails maxnet |
| enm.msgs | enm.msgs generic for ENMdetails object |
| enm.name | eval.name generic for ENMdetails object |
| enm.ncoefs | enm.ncoefs generic for ENMdetails object |
| ENMnull | ENMnull class |
| ENMnulls | Generate null ecological niche models (ENMs) and compare null... |
| enm.predict | enm.predict generic for ENMdetails object |
| enm.variable.importance | enm.variable.importance generic for ENMdetails object |
| eval.algorithm | eval.algorithm generic for ENMevaluation object |
| eval.bg | eval.bg generic for ENMevaluation object |
| eval.bg.grp | eval.bg.grp generic for ENMevaluation object |
| eval.clamp.directions | eval.clamp.directions generic for ENMevaluation object |
| eval.doClamp | eval.doClamp generic for ENMevaluation object |
| eval.models | eval.models generic for ENMevaluation object |
| eval.occs | eval.occs generic for ENMevaluation object |
| eval.occs.grp | eval.occs.grp generic for ENMevaluation object |
| eval.occs.testing | eval.occs.testing generic for ENMevaluation object |
| eval.other.settings | eval.other.settings generic for ENMevaluation object |
| eval.overlap | eval.overlap generic for ENMevaluation object |
| eval.partition.method | eval.partition.method generic for ENMevaluation object |
| eval.partition.settings | eval.partition.settings generic for ENMevaluation object |
| evalplot.envSim.hist | Similarity histogram plots for partition groups |
| evalplot.envSim.map | Similarity maps for partition groups |
| evalplot.grps | Partition group plots |
| evalplot.nulls | ENMnulls statistics plot |
| evalplot.stats | ENMevaluation statistics plot |
| eval.predictions | eval.predictions generic for ENMevaluation object |
| eval.results | eval.results generic for ENMevaluation object |
| eval.results.partitions | eval.results.partitions generic for ENMevaluation object |
| eval.rmm | eval.rmm generic for ENMevaluation object |
| eval.taxon.name | eval.taxon.name generic for ENMevaluation object |
| eval.tune.settings | eval.tune.settings generic for ENMevaluation object |
| eval.variable.importance | eval.variable.importance (variable importance) generic for... |
| loadENMevaluation | Load ENMevaluation object |
| lookup.enm | Look up ENMdetails abject |
| maxentJARversion | Look up version of maxent.jar |
| maxnet.predictRaster | Predict raster for maxnet |
| null.algorithm | null.algorithm generic for ENMnull object |
| null.doClamp | null.doClamp generic for ENMnull object |
| null.emp.results | null.emp.results generic for ENMnull object |
| null.mod.settings | null.mod.settings generic for ENMnull object |
| null.no.iter | null.no.iter generic for ENMnull object |
| null.other.settings | null.other.settings generic for ENMnull object |
| null.partition.method | null.partition.method generic for ENMnull object |
| null.partition.settings | null.partition.settings generic for ENMnull object |
| null.results | null.results generic for ENMnull object |
| null.results.partitions | null.results.partitions generic for ENMnull object |
| parse_lambdas | Parse Maxent lambdas information |
| partitions | Methods to partition data for evaluation |
| plot.sim.dataPrep | Internal plotting function |
| saveENMevaluation | Save ENMevaluation object |
| tune.enm | Iterate tuning of ENMs |
