| aue.access | EcoGenetics slot standard notation. Returns an accessor to... |
| aue.ad2wg | Transforming an adyacency matrix into a local weight matrix... |
| aue.aggregated_df | Generate aggregated dataframe |
| aue.check_class | Obtain the classes for each column of a data frame |
| aue.circle | Circle perimeter |
| aue.circle.w | Radial distance to a point. |
| aue.dataAngle | Angles for an XY coordinates matrix |
| aue.df2image | Transforming a data frame into a raster |
| aue.dummy2af | Converion from dummy allele matrix to frequencies |
| aue.ellipse | Solid ellipse |
| aue.formatLine | Remove spaces in a line of text |
| aue.fqal | Allelic frequencies |
| aue.genlab | Generation of generic labels of constant length |
| aue.geom.dist | Weight matrices based on different geometries |
| aue.get_os | Detect operative system |
| aue.image2df | Transforming a raster into a data frame with cartesian... |
| aue.is.poly | Identification of polymorphic loci |
| aue.phenosimil | Phenotypic similarity for vector, matrix or data frame... |
| aue.point | Solid circle |
| aue.rescale | Scaling a data frame or matrix to [0, 1] or [-1, 1] ranges |
| aue.rm.nonpoly | Remotion of non polymorphic loci |
| aue.rmspaces | Remove spaces and tabs at the begining and the end of each... |
| aue.rotate | Rotation of a matrix |
| aue.seqlist | Creation of a sequence of numbers in matrix or list format,... |
| aue.sort | Ordering the content of cells in a matrix. Ordering alleles... |
| aue.split_categorical | Split categorical variable into levels, using a second factor... |
| aue.square | Solid square |
| check_ecogen | check_ecogen |
| check_ecopop | check_ecopop |
| coordinates | coordinates |
| dot-printaccess | printaccess |
| E | E |
| eco | eco |
| eco2 | eco2 |
| eco3 | eco3 |
| eco4 | eco4 |
| eco.alfreq | Allelic frequency histograms for an ecogen genetic data frame |
| eco.association | Chi-square and Fisher's exact test for association of loci... |
| eco.autol-methods | show eco.lsa |
| eco.bearing | Angular Spatial Weights |
| eco.cbind | Combining ecogen objects by column |
| eco.clear | Clearing the working environment, maintaining only the... |
| eco.convert | Conversion utility for genetic data |
| eco.cormantel | Mantel and partial Mantel correlograms, omnidirectional and... |
| eco.correlog | Moran's I, Geary's C and bivariate Moran's I correlograms,... |
| eco.correlogB-class | eco.correlogB |
| eco.correlog-class | eco.correlog-class |
| eco.correlog-methods | globalplot |
| eco.detrend | Detrending spatial data with polynomial interpolation |
| eco.detrend-class | eco.detrend class |
| eco.detrend-methods | show eco.detrend |
| eco_dom | eco_dom |
| eco.dom_af | Compute allele frequencies for dominant data using different... |
| eco.fill_ecogen_with_df | Importation of data frames to ecogen |
| eco.fill_ecogen_with_ecopop | Importation of ecopop to ecogen |
| eco.format | Format tool for genetic data |
| eco.formula | Formula construction for ecogen objects |
| ecogen | Creating a new ecogen object |
| ecogen2ecopop | Conversion form ecogen to ecopop |
| ecogen2geneland | Creating input data for Geneland with an ecogen object |
| ecogen2genepop | Exporting an ecogen genetic data frame into Genepop format |
| ecogen2genind | Conversion form ecogen to genind and genind to ecogen |
| ecogen2gstudio | Conversion from ecogen to gstudio and gstudio to ecogen |
| ecogen2hierfstat | Converting an ecogen genetic data frame into a hierfstat data... |
| ecogen2spagedi | Exporting an ecogen genetic data frame into SPAGeDi format |
| ecogen-class | ecogen class |
| EcoGenetics-accessors | Generic accessors for EcoGenetics objects |
| ecogenetics_devel | EcoGenetic devel site |
| EcoGenetics-package | Management and Exploratory Analysis of Spatial Data in... |
| ecogenetics_tutorial | EcoGenetic tutorial site |
| ecogen-methods | names |
| eco.gsa | Global spatial analysis |
| eco.gsa-class | eco.gsa class |
| eco.gsa-methods | show eco.gsa |
| eco.IBD | plot eco.IBD |
| eco.IBD-class | eco.IBD class |
| eco.IBD-methods | show eco.IBD |
| eco.kin.hardy | Kinship and relationship estimation for dominant markers |
| eco.kin.loiselle | Obtention of the multilocus Loiselle's Fij matrix |
| eco.lagweight | Obtention of a list of spatial weights for classes defined by... |
| eco.lagweight-class | eco.lagweight class |
| eco.lagweight-methods | show eco.lagweight |
| ecolist-class | ecolist class |
| eco.listlsa-class | eco.listlsa |
| eco.listlsa-method | listplot |
| eco.listw2ew | Conversion from listw to ecoweight |
| eco.lmtree | Fitting Multiple Linear Regression models by stepwise AIC... |
| eco.lmtree.mctree-summary | Summary for eco.lmtree output |
| eco.lmtree-methods | show eco.mlm |
| eco.lock | eco.lock |
| eco.lock-ecogen-method | Lock rows in an ecogen object |
| eco.lock-ecopop-method | Lock rows in an ecogen object |
| eco.lsa | Local spatial analysis |
| eco.lsa-class | eco.lsa class |
| eco.lsa-methods | plot eco.lsa |
| eco.malecot | Global and local kinship analysis |
| eco.mantel | Mantel and partial Mantel tests, with truncation option |
| eco.mctree-class | eco.mctree-class |
| eco.merge | Merging two ecogen objects. Ordering the rows of an ecogen... |
| eco.mlm-class | eco.mlm-class |
| eco.multilsa-class | eco.multilsa class |
| eco.multilsa-method | plot eco.multilsa |
| eco.NDVI | Generation of atmospherically corrected NDVI and MSAVI2... |
| eco.NDVI.post | Postprocessing for NDVI and MSAVI2 temporal series of Landsat... |
| eco.nei_dist | Estimate Nei distance matrix |
| eco.old2new | eco.old2new |
| eco.old2new-ecogen-method | Update an old ecogen or ecopop object to version >= 1.5.0-1 |
| eco.old2new-ecopop-method | Update an old ecogen or ecopop object to a version compatible... |
| eco.order | Functions deprecated in EcoGenetics version 1.2.0-2 |
| eco.pairtest | Kruskall - Wallis + Wilcoxon (Mann-Whitney U) and aov +... |
| eco.plotCorrelog | eco.plotCorrelog |
| eco.plotCorrelogB | eco.plotCorrelogB |
| eco.plotGlobal | GSA plot methods |
| eco.plotLocal | eco.plotLocal |
| eco.plotWeight | Plot for a connection network |
| ecopop | Creating a new ecopop object |
| ecopop2genpop | Conversion form ecopop to genpop and genpop to ecopop |
| ecopop-class | ecopop class |
| ecopop_counts2af | ecopop_counts2af |
| ecopop-methods | names |
| eco.post.geneland | Log posterior probability plot for Geneland repetitions with... |
| eco.rasterplot | Rasterplot graphs |
| eco.rasterplot-eco.multilsa-method | rasterplot graph for eco.lsa results |
| eco.rbind | Combining ecogen objects by row |
| eco.remove | Creating an updated ecogen object by removing results of the... |
| eco.slide.con | Sliding a window along a connection network |
| eco.slide.matrix | Sliding window for matrix data |
| eco.split | Splitting an ecogen object by group |
| eco.subset | Subsetting an ecogen object by group |
| eco.theilsen | Theil-sen regression for a raster time series, with... |
| eco.unlock | eco.unlock |
| eco.unlock-ecogen-method | Unlock rows in an ecogen object |
| eco.unlock-ecopop-method | Unlock rows in an ecogen object |
| eco.variogram | Empirical variogram |
| eco.variogram-class | eco.variogram class |
| eco.weight | Spatial weights |
| eco.weight-class | eco.weight class |
| eco.weight-methods | show eco.weight |
| environment | environment |
| forestplot-methods | Forestplot graphs |
| G | G |
| genepop2ecogen | Importing a Genepop file |
| genotype | genotype |
| genotype_dom | genotype_dom |
| grf.multiplot | Multiple plot function for ggplot |
| grf.seqmultiplot | Plot a ggplot sequence in layers of n plots arranged in k... |
| int.break | breaks obtention |
| int.check.colnames | Check column names |
| int.check.con | Check a connection network |
| int.check.group | Check factor name consistency in a data frame and returns the... |
| int.check.ncod | Check ploidy and number of digits per allele |
| int.check.numeric | Check numeric format in a data frame |
| int.check.rownames | Check row names |
| int.check.to_numeric | check if elements are numbers and if not convert the matrix... |
| int.check.vnames | Check a vector of names |
| int.corvarToDeg | eco.correlog output to degrees list |
| int.crosscor | Cross correlation. Internal. |
| int.df2genind | importer |
| int.geary | Geary internal. |
| int.gendata2genind | int.gendata2genind |
| int.gendata-class | int.gendata |
| int.genind | constructor |
| int.genind2df | export |
| int.genind2gendata | int.genind2gendata |
| int.genind-class | int.genind |
| int.jackknife | d-Jackknife estimation. |
| int.joincount | Join-count statistic, internal. |
| int.kin.loiselle | obtetion of multilocus Loiselle's Fij matrix |
| int.loc2al | INTERNAL CONVERSION TOOLS FOR GENETIC DATA |
| int.mantel | Mantel and partial Mantel tests, internal. |
| int.moran | Moran internal. |
| int.multiplot | int.multiplot method. Graphical processing of multiple... |
| int.multiplot-class | int.multiplot class |
| int.multitable | Table construction for multiple test result. |
| int.order | Ordering the rows of the data frames contained in an ecogen... |
| int.popdata-class | int.popdata class |
| int.random.test | random test |
| is.locked | is.locked |
| is.locked-ecogen-method | Test if rows of an ecogen object are locked |
| is.locked-ecopop-method | Test if rows of an ecopop object are locked |
| is.meta | Detection of metacharacters |
| is.wholenumber | test whole number |
| meta2char | Metachacter to character |
| misc.2symmetric | Conversion of a non symmetric binary matrix into symmetric. |
| misc.dlatlon2distm | Computing a distance matrix in meters among points in decimal... |
| misc.parse.filter | Filter a raster using a conditional expression and values in... |
| misc.undimmattg | Creates a matrix without diagonal, in row order |
| my_ecopop | my_ecopop |
| P | P |
| phenotype | phenotype |
| pipe | Pipe operator |
| plot-eco.gsa-ANY-method | Plot for eco.gsa objects |
| plot-eco.weight-ANY-method | Plot for a connection network |
| rankplot-methods | Rankplot graphs |
| S | S |
| spagedi2ecogen | Importing a SPAGeDi file, via conversion to ecogen |
| structure | structure |
| sub-sub-ecogen-numeric-missing-method | [[ |
| sub-subset-ecogen-numeric-missing-method | [[<- |
| tab | tab |
| table.sokal | table.sokal |
| XY | XY |
