Files in IntLIM
Integration of Omics Data Using Linear Modeling
MD5
README.md
NAMESPACE
DESCRIPTION
R/PermuteIntLIM.R
R/internalfunctions.R
R/04_ProcessResults.R
R/AllClasses.R
R/crossvalfunctions.R
R/IntLimResults_extendedfunctions.R
R/writingfunctions.R
R/02_FilterData.R
R/01_ReadData.R
R/runShiny.R
R/plottingfunctions.R
R/statsfunctions.R
R/03_RunIntLim.R
inst/doc/IntLimVignette.Rmd
inst/doc/IntLimVignette.R
inst/doc/IntLimVignette.html
inst/extdata/fData.metab.csv
inst/extdata/NCItestinput.csv
inst/extdata/geneData.csv
inst/extdata/metabData.csv
inst/extdata/fData.gene.csv
inst/extdata/pData.csv
inst/shinyApp/ui.R
inst/shinyApp/README.md
inst/shinyApp/global.R
inst/shinyApp/Rplot001.jpg
inst/shinyApp/server.R
inst/shinyApp/www/google_analytics.html
build/vignette.rds
tests/testthat.R
tests/testthat/test-processing.R
tests/testthat/test-filtering.R
tests/testthat/test-reading.R
tests/testthat/test-perm.R
tests/testthat/test-crossval.R
tests/testthat/test-run-intlim.R
vignettes/IntLimVignette.Rmd
man/BuildDataAndLines.Rd
man/pvalCoefVolcano.Rd
man/InteractionCoefficientGraph.Rd
man/ShowStats.Rd
man/ProcessResults.Rd
man/ProcessResultsContinuous.Rd
man/getQuantileForInteractionCoefficient.Rd
man/multi.which.Rd
man/OutputData.Rd
man/ReadData.Rd
man/getstatsOneLM.Rd
man/RunIntLim.Rd
man/getStatsAllLM.Rd
man/PlotPairFlat.Rd
man/HistogramPairs.Rd
man/MarginalEffectsGraphDataframe.Rd
man/PlotFoldOverlapUpSet.Rd
man/PermuteIntLIM.Rd
man/PermutationCountSummary.Rd
man/RemovePlusInCovars.Rd
man/PValueBoxPlots.Rd
man/CreateCrossValFolds.Rd
man/RunIntLimAllFolds.Rd
man/IntLIM-package.Rd
man/RunLM.Rd
man/RunCrossValidation.Rd
man/IntLimData-class.Rd
man/PlotDistributions.Rd
man/DistRSquared.Rd
man/DistPvalues.Rd
man/FilterDataFolds.Rd
man/PlotPair.Rd
man/FilterData.Rd
man/PlotPCA.Rd
man/ProcessResultsAllFolds.Rd
man/OutputResults.Rd
man/PermutationPairSummary.Rd
man/runIntLIMApp.Rd
man/MarginalEffectsGraph.Rd
man/IntLimResults-class.Rd
