Files in LipidMS

Lipid Annotation for LC-MS/MS DDA or DIA Data

README.md R/internalProcessing.R R/LipidMS.R R/LipidMSapp.R R/msbatchAnnotationFunctions.R R/internal.R R/idFunctionsPos.R R/subfunctionsIdentification.R R/internaldbs.R R/idFunctionsNeg.R R/dataProcessing.R R/additionalFunctions.R inst/doc/vignette.Rmd inst/doc/vignette.R inst/LipidMSapp/ui.R inst/LipidMSapp/server.R vignettes/vignette.Rmd man/rtcorrection.Rd man/filtermsms.Rd man/idPEpos.Rd man/pcpdb.Rd man/MassLysoPCp.Rd man/idDGpos.Rd man/idPCopos.Rd man/MassPA.Rd man/groupmsbatch.Rd man/idBAneg.Rd man/idPEpneg.Rd man/peodb.Rd man/organizeResults.Rd man/chains.Rd man/MassHFA.Rd man/idPEneg.Rd man/idPEppos.Rd man/carnitinesdb.Rd man/coelutionScore.Rd man/dbOneChain.Rd man/coelutingFrags.Rd man/joinAnnotationResults.Rd man/cbs.Rd man/pedb.Rd man/idFAneg.Rd man/lysopgdb.Rd man/psdb.Rd man/MassLysoPC.Rd man/MassLysoPG.Rd man/lysopsdb.Rd man/MassLysoPA.Rd man/dbFourChains.Rd man/plotLipids.Rd man/idCarpos.Rd man/lysopcpdb.Rd man/pcdb.Rd man/idPSneg.Rd man/adductsTable.Rd man/pidb.Rd man/searchIsotopesmsbatch.Rd man/annotatemsbatch.Rd man/sphPdb.Rd man/MassPG.Rd man/tgdb.Rd man/cldb.Rd man/idLPEpos.Rd man/dbTwoChains.Rd man/idSMpos.Rd man/MassLysoPAo.Rd man/idLPCpos.Rd man/idPIpos.Rd man/MassCer.Rd man/cerPdb.Rd man/MassCL.Rd man/partitioning.Rd man/MassPEo.Rd man/confLevels.Rd man/checkIntensityRules.Rd man/ddaFrags.Rd man/dataProcessing.Rd man/indexrtpart.Rd man/getFormula.Rd man/crossAdducts.Rd man/pepdb.Rd man/fadb.Rd man/MassAcylCer.Rd man/padb.Rd man/idPIneg.Rd man/idLPIneg.Rd man/MassPCo.Rd man/lysopedb.Rd man/lysopcodb.Rd man/fahfadb.Rd man/idPCpneg.Rd man/MassPCp.Rd man/crossTables.Rd man/idPCppos.Rd man/smdb.Rd man/batchdataProcessing.Rd man/MassPS.Rd man/lysopeodb.Rd man/MassLysoPS.Rd man/idPOS.Rd man/plotticmsbatch.Rd man/MassPI.Rd man/MassCarnitines.Rd man/filtrateAdducts.Rd man/sphdb.Rd man/idPGneg.Rd man/getInclusionList.Rd man/idCerneg.Rd man/idPCpos.Rd man/alignmsbatch.Rd man/annotateIsotopes.Rd man/idLPCneg.Rd man/idLPEneg.Rd man/joinfrags.Rd man/chainFrags.Rd man/idTGpos.Rd man/getfeaturestable.Rd man/MassPE.Rd man/select.Rd man/idLPSneg.Rd man/MassFAHFA.Rd man/fillpeaksmsbatch.Rd man/idSphneg.Rd man/clust.Rd man/peakdetection.Rd man/idSphpos.Rd man/MassGlcCer.Rd man/diffcb.Rd man/idCerPpos.Rd man/cerdb.Rd man/findMS2precursor.Rd man/MassPEp.Rd man/idPGpos.Rd man/idPCneg.Rd man/MassSph.Rd man/sumChains.Rd man/idPConeg.Rd man/hfadb.Rd man/idSphPpos.Rd man/readMSfile.Rd man/mgdb.Rd man/idPEoneg.Rd man/idSphPneg.Rd man/idCerPneg.Rd man/idNEG.Rd man/pgdb.Rd man/idFAHFAneg.Rd man/MassSphP.Rd man/MassLysoPE.Rd man/ploteicmsbatch.Rd man/MassLysoPI.Rd man/clustdist.Rd man/MassLysoPCo.Rd man/acylcerdb.Rd man/mzMatch.Rd man/lysopadb.Rd man/setmsbatch.Rd man/idSMneg.Rd man/idCLneg.Rd man/MassPC.Rd man/MassMG.Rd man/lysopcdb.Rd man/createLipidDB.Rd man/idAcylCerneg.Rd man/MassSM.Rd man/clustering.Rd man/assignDB.Rd man/lysopaodb.Rd man/rtdevplot.Rd man/LipidMSapp.Rd man/lysopepdb.Rd man/MassCerP.Rd man/dbThreeChains.Rd man/searchIsotopes.Rd man/MassLysoPEp.Rd man/findCandidates.Rd man/CEdb.Rd man/idPEopos.Rd man/MassTG.Rd man/nlsphdb.Rd man/MassCE.Rd man/checkClass.Rd man/findPrecursor.Rd man/MassPIP3.Rd man/dbSphingolipids.Rd man/MassLysoPEo.Rd man/getallpeaks.Rd man/checkIntRules.Rd man/idCerpos.Rd man/badb.Rd man/lysopidb.Rd man/dgdb.Rd man/idMGpos.Rd man/baconjdb.Rd man/idCEpos.Rd man/MassFA.Rd man/MassPIP.Rd man/idAcylCerpos.Rd man/pcodb.Rd man/frags.Rd man/MassDG.Rd man/idLPGneg.Rd man/MassPIP2.Rd man/combineChains.Rd