API for MetaIntegrator
Meta-Analysis of Gene Expression Data
| Global functions | |
|---|---|
| .GEM_inf_gene_remover | Source code |
| .GEM_log_check | Source code |
| .GEO_fData_key_parser | Source code |
| .GEOqueryCreateGEM | Source code |
| .GEOqueryGEO2GEM | Source code |
| .KestBuntBoot | Source code |
| .aucROCframe | Source code |
| .backSearchWeighted | Source code |
| .backsearchInner | Source code |
| .backsearchNeg | Source code |
| .backsearchPos | Source code |
| .calcauprc | Source code |
| .check.metaGEM.study | Source code |
| .checkClass | Source code |
| .checkType | Source code |
| .classVectorChecker | Source code |
| .cleanNA | Source code |
| .cleanUpCharacteristicsCol | Source code |
| .clinParamMultiRoc | Source code |
| .combine.significances | Source code |
| .convertDiscoveryListToGenes | Source code |
| .createAnnTable | Source code |
| .createRegressionPlot | Source code |
| .createViolinPlot | Source code |
| .datasetCheckAll | Source code |
| .datasetCheckExpr | Source code |
| .datasetCheckKeys | Source code |
| .datasetCheckNull | Source code |
| .datasetCheckRowColNames | Source code |
| .datasetCheckType | Source code |
| .effect.sizes | Source code |
| .ensembl_ensgID_table | Source code |
| .ensembl_entrez_connector | Source code |
| .ensembl_entrez_table | Source code |
| .ensembl_gene_connector_hs76 | Source code |
| .extractDataForGenesDT | Source code |
| .extractDataFromGEM | Source code |
| .extractOneSampleCharacteristics | Source code |
| .filterMetaRun | Source code |
| .fleshOutCharacteristicNAs | Source code |
| .forwardSearchInner | Source code |
| .forwardSearchNeg | Source code |
| .forwardSearchPos | Source code |
| .forwardSearchWeighted | Source code |
| .geoquery_gems_2_singlelist | Source code |
| .get.ttest.P | Source code |
| .getAUCsGenesList | Source code |
| .getES | Source code |
| .getGenesData | Source code |
| .getWeightedAUCsGenesList | Source code |
| .leaveOneOutMetaAnalysisWrapper | Source code |
| .matchAll | Source code |
| .metaAnalysisCheckNull | Source code |
| .metaAnalysisCheckType | Source code |
| .metaCheckAll | Source code |
| .metaCheckNull | Source code |
| .metaCheckType | Source code |
| .metaFilterCheckNull | Source code |
| .metaFilterCheckType | Source code |
| .metaROC.KestBuntix | Source code |
| .metaROCsummaries | Source code |
| .multimerge | Source code |
| .newMetaROC | Source code |
| .originalDataNameChecker | Source code |
| .originalDataNameConverter | Source code |
| .plotESdistribution | Source code |
| .pool.inverseVar | Source code |
| .prcData | Source code |
| .removeUselessColumns | Source code |
| .replaceNAs | Source code |
| .replaceNaNs | Source code |
| .replaceValues | Source code |
| .rocObjList | Source code |
| .rocdata | Source code |
| .rocplot.mult.SummROC | Source code |
| .rocplot.multiple | Source code |
| .rocplot.single | Source code |
| .runMetaAnalysisCore | Source code |
| .scoreGenesMtx | Source code |
| .strsplitVector | Source code |
| .strsplit_emptyString | Source code |
| .sum.of.logs | Source code |
| .summ.eff.within | Source code |
| .summ.sigs.within | Source code |
| .summarizeSplit | Source code |
| .summaryROCcalculate | Source code |
| .summaryROCrocObjList | Source code |
| .ttest.Pvalues | Source code |
| .ttest.Qvalues | Source code |
| .ucsc_genbank_connector_hg19 | Source code |
| .ucsc_genbank_table | Source code |
| .ucsc_refseq_connector_hg19 | Source code |
| .ucsc_refseq_table | Source code |
| .youdenJ | Source code |
| HGNCgeneCorrection | Source code |
| MetaIntegrator | Man page |
| backwardSearch | Man page Source code |
| calcMetaPower | Man page Source code |
| calculateROC | Man page Source code |
| calculateScore | Man page Source code |
| checkDataObject | Man page Source code |
| classFunction | Man page Source code |
| cleanUpPheno | Man page Source code |
| coconutMetaIntegrator | Man page Source code |
| correctionHelper | Source code |
| dataLoad | Source code |
| ens_ensgID_table | Man page |
| ens_entrez_table | Man page |
| filterGenes | Man page Source code |
| forestPlot | Man page |
| forwardSearch | Man page Source code |
| geneLevelMeta | Source code |
| geneSymbolCorrection | Man page Source code |
| getGEOData | Man page Source code |
| getMostRecentFilter | Man page Source code |
| getSampleLevelGeneData | Man page Source code |
| ggForestPlot | Man page Source code |
| heatmapPlot | Man page Source code |
| immunoStatesDecov | Man page Source code |
| immunoStatesGenePropCorr | Man page Source code |
| immunoStatesMatrix | Man page |
| immunoStatesMeta | Man page Source code |
| imputeSex | Man page Source code |
| lincsBaitCorr | Man page Source code |
| lincsBaitCorrInternal | Source code |
| lincsCorrelate | Man page Source code |
| lincsCorrelateInternal | Source code |
| lincsDataAccess | Source code |
| lincsHeatmap | Source code |
| lincsInteractors | Source code |
| lincsQcAccess | Source code |
| lincsReport | Source code |
| lincsTools | Man page Source code |
| manhattanPlot | Man page Source code |
| multiplePRCPlot | Man page Source code |
| multipleROCPlot | Man page Source code |
| pooledROCPlot | Man page Source code |
| prcPlot | Man page Source code |
| predvalPlot | Man page Source code |
| regressionPlot | Man page Source code |
| rocPlot | Man page Source code |
| runMetaAnalysis | Man page Source code |
| subsetOriginalData | Man page Source code |
| summarizeFilterResults | Man page Source code |
| summaryROCCalc | Man page Source code |
| summaryROCPlot | Man page Source code |
| tinyMetaObject | Man page |
| ucsc_genbank_table | Man page |
| ucsc_refseq_table | Man page |
| violinPlot | Man page Source code |
