Files in MetaIntegrator

Meta-Analysis of Gene Expression Data

README.md R/coconutMetaIntegrator.R R/multiplePRCPlot.R R/imputeSex.R R/classFunction.R R/violinPlot.R R/pooledROCplot.R R/calculatePower.R R/heatmapPlot.R R/subsetOriginalData.R R/predvalPlot.R R/getGEOData.R R/calculateScore.R R/cleanUpPheno.R R/regressionPlot.R R/immunoStatesMeta.R R/filterGenes.R R/checkDataObject_functions.R R/immunoStates.R R/multipleROCPlot.R R/ggForestPlot.R R/geneSymbolCorrection.R R/summarizeFilterResults.R R/metaAnalysis.R R/getSampleLevelGeneData.R R/manhattanPlot.R R/summaryROCPlot.R R/lincsTools.R R/prcPlot.R R/ROC_and_search_functions.R R/forestPlot.R R/checkDataObject.R R/getMostRecentFilter.R R/metaAnalysisFoundation.R R/runMetaAnalysis.R vignettes/MetaIntegratorRealExample.Rmd vignettes/MetaIntegrator.Rmd vignettes/images/schema_simplified.pdf man/getGEOData.Rd man/imputeSex.Rd man/summarizeFilterResults.Rd man/lincsCorrelate.Rd man/violinPlot.Rd man/manhattanPlot.Rd man/ens_entrez_table.Rd man/forwardSearch.Rd man/multipleROCPlot.Rd man/metaIntegrator_public-package.Rd man/immunoStatesMeta.Rd man/runMetaAnalysis.Rd man/lincsBaitCorr.Rd man/immunoStatesDecov.Rd man/backwardSearch.Rd man/calculateScore.Rd man/forestPlot.Rd man/subsetOriginalData.Rd man/calcMetaPower.Rd man/cleanUpPheno.Rd man/rocPlot.Rd man/ggForestPlot.Rd man/prcPlot.Rd man/checkDataObject.Rd man/immunoStatesGenePropCorr.Rd man/coconutMetaIntegrator.Rd man/lincsTools.Rd man/getSampleLevelGeneData.Rd man/getMostRecentFilter.Rd man/heatmapPlot.Rd man/predvalPlot.Rd man/multiplePRCPlot.Rd man/pooledROCPlot.Rd man/ens_ensgID_table.Rd man/ucsc_genbank_table.Rd man/calculateROC.Rd man/filterGenes.Rd man/summaryROCPlot.Rd man/immunoStatesMatrix.Rd man/ucsc_refseq_table.Rd man/regressionPlot.Rd man/classFunction.Rd man/tinyMetaObject.Rd man/summaryROCCalc.Rd man/geneSymbolCorrection.Rd tests/runTests.R inst/lincsReport.Rmd inst/doc/MetaIntegratorRealExample.Rmd inst/doc/MetaIntegrator.R inst/doc/MetaIntegrator.Rmd inst/unitTests/test_violinPlot.R inst/unitTests/test_rocPlot.R inst/unitTests/test_getMostRecentFilter.R inst/unitTests/test_checkDataObject.R inst/unitTests/test_calculateROC.R inst/unitTests/test_getSampleLevelGeneData.R inst/unitTests/test_runMetaAnalysis.R inst/unitTests/test_summarizeFilterResults.R inst/unitTests/test_backwardSearch.R inst/unitTests/test_forestPlot.R inst/unitTests/test_filterGenes.R inst/unitTests/test_forwardSearch.R inst/unitTests/test_calculateScore.R inst/unitTests/goldStandardOutput/rocPlots.pdf inst/unitTests/goldStandardOutput/forestPlots.pdf inst/unitTests/goldStandardOutput/violinPlots.pdf