Nothing
#
# Copyright 2007-2020 by the individuals mentioned in the source code history
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
beginTravisFold <- function(key, text) {
cat(paste0("travis_fold:start:",key,"\033[33;1m",text,"\033[0m"),fill=T)
}
endTravisFold <- function(key) {
cat(paste0("\ntravis_fold:end:",key,"\r"),fill=T)
}
args <- commandArgs(trailingOnly = TRUE)
if (any(args == 'gctorture')) {
gctorture(TRUE)
cat("*** GCTORTURE ENABLED ***\n");
}
if (all(file.exists("inst/models", "models") == c(TRUE,FALSE))) {
file.symlink("inst/models", "models")
}
rexec <- Sys.getenv("REXEC")
if (rexec == "") rexec <- "R"
if (system2(rexec, args='--vanilla', stdout=FALSE, stderr=FALSE,
input='library(OpenMx); .Call(OpenMx:::.EigenDebuggingEnabled); q(status=3)') == 3) {
cat("**", fill=TRUE)
cat("** WARNING: Eigen conformability checking is DISABLED **", fill=TRUE)
cat("**", fill=TRUE)
}
library(OpenMx)
mxVersion()
directories <- c('models/passing')
if (any(args == 'nightly')) {
directories <- c(directories, 'demo', 'models/nightly')
}
if (any(args == 'failing')) {
directories <- c('models/failing')
}
if (any(args == 'gctorture')) {
files <- c('models/passing/AlgebraComputePassing.R',
'models/passing/TestRowObjective.R')
} else {
files <- list.files(directories, pattern = '^.+[.]R$',
full.names = TRUE, recursive = TRUE)
}
if (any(args == 'lisrel')) {
files <- grep("LISREL", files, value=TRUE, ignore.case=TRUE)
}
outputFilename <- list()
errors <- list()
warnRec <- list()
runtimes <- numeric()
errorRecover <- function(script, opt, index) {
mxSetDefaultOptions()
mxOption(NULL, "Default optimizer", opt)
cat(paste(opt, index, "of",
length(files), script, "...\n"))
outputFilename[[opt]][[script]] <- tempfile()
outputFile <- tryCatch(suppressWarnings(file(outputFilename[[opt]][[script]], 'w')),
error = function(e) { file('nul', 'w') } )
sink(outputFile, type = 'output')
start <- Sys.time()
tryCatch.W.E <- function(expr) {
W <- list()
w.handler <- function(w) { # warning handler
W[[1 + length(W)]] <<- w
invokeRestart("muffleWarning")
}
list(value = withCallingHandlers(tryCatch(expr, error = function(e) e),
warning = w.handler), warning = W)
}
got <- tryCatch.W.E(source(script, chdir = TRUE))
stop.tm <- Sys.time()
timeDifference <- stop.tm - start
runtimes[[paste(opt,script,sep=":")]] <<- as.double(timeDifference, units = "secs")
err <- got$value
sink(type = 'output')
close(outputFile)
if (is(err, "error") && err$message != 'SKIP') {
errors[[opt]][[script]] <<- err$message
cat("*** ERROR from", script, '***\n')
print(err$message)
} else {
file.remove(outputFilename[[opt]][[script]])
}
warnRec[[opt]][[script]] <<- got$warning
rm(envir=globalenv(),
list=setdiff(ls(envir=globalenv()),
c('warnRec', 'errors', 'errorRecover', 'opt', 'outputFile', 'outputFilename',
'files', 'directories', 'runtimes', 'beginTravisFold', 'endTravisFold')))
}
optimizers <- strsplit(Sys.getenv("IMX_OPT_ENGINE"), "\\s")[[1]]
if (length(optimizers) == 0) {
optimizers <- c('SLSQP')
if (!any(args == 'gctorture')) {
optimizers <- c(optimizers, 'CSOLNP')
if (imxHasNPSOL()) {
optimizers <- c(optimizers, 'NPSOL')
}
}
}
for (opt in optimizers) {
beginTravisFold(opt, paste("TEST", opt))
errors[[opt]] <- list()
outputFilename[[opt]] <- list()
warnRec[[opt]] <- list()
if (length(files) > 0) {
for (i in 1:length(files)) {
errorRecover(files[[i]], opt, i)
}
}
endTravisFold(opt)
}
totalErrors <- sum(sapply(errors, length))
cat("Number of errors:", totalErrors, '\n')
if (totalErrors > 0) {
for (opt in names(errors)) {
oerr <- errors[[opt]]
fileName <- names(oerr)
if (length(oerr)) {
for (i in 1:length(oerr)) {
cat("Error", opt, fileName[[i]], '***\n')
print(oerr[[i]])
cat('\n')
}
system(paste("cat", outputFilename[[opt]][[ fileName[[i]] ]]), wait=FALSE)
}
}
} else {
for (opt in names(warnRec)) {
owarn <- warnRec[[opt]]
count <- sapply(owarn, length)
if (any(count > 0)) {
cat("**", opt ,"total warnings =", sum(count), "\n", fill=TRUE)
wscript <- names(owarn[count > 0])
for (ws1 in wscript) {
cat("*", opt, "warnings from", ws1, "\n", fill=TRUE)
wlist <- owarn[[ws1]]
for (w1 in wlist) {
cat(paste(" ", w1), fill=TRUE)
}
}
}
}
}
write.csv(as.data.frame(runtimes), "runtimes.csv")
cat("Finished testing models.\n")
quit(status=totalErrors)
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