AbstractCBS: The AbstractCBS class

AbstractCBSR Documentation

The AbstractCBS class

Description

Package: PSCBS
Class AbstractCBS

list
~~|
~~+--AbstractCBS

Directly known subclasses:
CBS, NonPairedPSCBS, PSCBS, PairedPSCBS

public abstract class AbstractCBS
extends list

All CBS-style segmentation results extend this class, e.g. CBS and PairedPSCBS.

Usage

AbstractCBS(fit=list(), sampleName=fit$sampleName, ...)

Arguments

fit

A list structure containing the segmentation results.

sampleName

A character string.

...

Not used.

Fields and Methods

Methods:

adjustPloidyScale -
extractCNs -
getChangePoints -
getChromosomes -
getLocusData -
getSegmentSizes -
getSegments -
mergeThreeSegments -
nbrOfChangePoints -
nbrOfChromosomes -
nbrOfLoci -
nbrOfSegments -
normalizeTotalCNs -
ploidy -
ploidy<- -
plotTracks -
sampleCNs -
writeWIG -

Methods inherited from list:
Ops,nonStructure,vector-method, Ops,structure,vector-method, Ops,vector,nonStructure-method, Ops,vector,structure-method, all.equal, as.data.frame, attachLocally, callHooks, coerce,ANY,list-method, relist, type.convert, within

Author(s)

Henrik Bengtsson


PSCBS documentation built on May 29, 2024, 5:59 a.m.