Description Usage Arguments Value Author(s) See Also
Estimate global background in segmented copy numbers. The global background, here called κ, may have multiple origins where normal contamination is one, but not necessarily the only one.
1 2 | ## S3 method for class 'PairedPSCBS'
estimateKappa(this, flavor=c("density(C1)"), ...)
|
flavor |
A |
... |
Additional arguments passed to the estimator. |
Returns the background estimate as a numeric
scalar.
Henrik Bengtsson
Internally, one of the following methods are used:
*estimateKappaByC1Density()
.
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