estimateDeltaABBySmallDH.PairedPSCBS: Estimate a threshold for calling allelic balance from DH

Description Usage Arguments Value Algorithm Author(s) See Also

Description

Estimate a threshold for calling allelic balance from DH.

Usage

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## S3 method for class 'PairedPSCBS'
estimateDeltaABBySmallDH(fit, q1=0.05, q2=0.9, ..., verbose=FALSE)

Arguments

q1

A numeric value specifying the weighted quantile of the segment-level DHs used to identify segments with small DH means.

q2

A numeric value specifying the quantile of the locus-level DH signals for those segments with small DH mean levels.

...

Not used.

verbose

See Verbose.

Value

Returns the threshold estimate as a numeric scalar.

Algorithm

Author(s)

Henrik Bengtsson

See Also

Instead of calling this method explicitly, it is recommended to use the *estimateDeltaAB() method.


PSCBS documentation built on May 6, 2019, 1:05 a.m.