findNeutralCopyNumberState: Call segments to be copy neutral based on allelic imbalance...
In PSCBS: Analysis of Parent-Specific DNA Copy Numbers

Call segments to be copy neutral based on allelic imbalance calls and total copy number estimates.

1
2
3

## Default S3 method:
findNeutralCopyNumberState(C, isAI, weights=NULL, ..., minDensity=1e-10,
  flavor=c("firstPeak", "maxPeak"), verbose=FALSE)

`C`	A `numeric` `vector` of region-level total copy number estimates.
`isAI`	A `logical` `vector` of "allelic imbalance" calls.
`weights`	An optional `numeric` `vector` of non-negative weights.
`...`	Further arguments to be passed to the density estimation function.
`minDensity`	A `numeric` value, below which density peaks are discarded.
`flavor`	A `character` string specifying how to identify the mode of the AB segments.
`verbose`	If `TRUE`, extra information is output.