dropRegions.AbstractCBS: Drops chromosomal regions (a connected set of segments)
In PSCBS: Analysis of Parent-Specific DNA Copy Numbers

Description Usage Arguments Value Author(s) See Also

Drops chromosomal regions (a connected set of segments) each of a certain size (number of segments). None of the statistics are recalculated.

1 2	## S3 method for class 'AbstractCBS' dropRegions(this, regions, H=1, ..., asMissing=FALSE, verbose=FALSE)

`regions`	An `integer` `vector` of length R specifying the indices of the left most segment in each of the R regions to be dropped.
`H`	A non-negative `integer` specifying the size of each region, i.e. the number of segments per region.
`...`	Additional arguments passed to `*extractRegions()`.
`asMissing`	If `TRUE`, dropped segments are replaced by missing values, otherwise they are truly dropped.
`verbose`	A `logical` or a `Verbose` object.

Returns an AbstractCBS object of the same class with (at most) R*H segments dropped. If some regions overlap (share segments), then fewer than R*H segments are dropped.

Henrik Bengtsson

Internally *extractRegions() is used. See also *dropChangePoint() and *mergeTwoSegments(). For more information see AbstractCBS.

PSCBS documentation built on Oct. 23, 2021, 9:09 a.m.