getFractionOfGenomeLost.CBS: Calculates the fraction of the genome lost, gained, or...

Description Usage Arguments Value Author(s) References See Also

Description

Calculates the fraction of the genome lost, gained, or aberrant either way (in sense of total copy numbers), using definitions closely related to those presented in [1].

Usage

1
2
## S3 method for class 'CBS'
getFractionOfGenomeLost(fit, ...)

Arguments

...

Not used.

Value

Returns a double in [0,1].

Author(s)

Henrik Bengtsson

References

[1] Fridlyand et al. Breast tumor copy number aberration phenotypes and genomic instability, BMC Cancer, 2006.

See Also

Internally, *getCallStatistics() is used. For more information see CBS.


PSCBS documentation built on May 6, 2019, 1:05 a.m.