API for RAINBOWR
Genome-Wide Association Study with SNP-Set Methods

Global functions
CalcThreshold	Man page Source code
EM3.cpp	Man page Source code
EM3.general	Man page Source code
EM3.linker.cpp	Man page Source code
EM3.op	Man page Source code
EM3_kernel	Source code
EMM.cpp	Man page Source code
EMM1.cpp	Man page Source code
EMM2.cpp	Man page Source code
EMM2_last_step	Source code
GWAS_F_test	Source code
MAF.cut	Man page Source code
P_calc	Source code
RAINBOWR	Man page
RAINBOWR-package	Man page
RGWAS.epistasis	Man page Source code
RGWAS.menu	Man page Source code
RGWAS.multisnp	Man page Source code
RGWAS.multisnp.interaction	Man page Source code
RGWAS.normal	Man page Source code
RGWAS.normal.interaction	Man page Source code
RGWAS.twostep	Man page Source code
RGWAS.twostep.epi	Man page Source code
Rice_Zhao_etal	Man page
Rice_geno_map	Man page
Rice_geno_score	Man page
Rice_haplo_block	Man page
Rice_pheno	Man page
SS_gwas	Man page Source code
See	Man page Source code
aHinvb_out	Source code
aPb_series_out	Source code
adjustGRM	Man page Source code
calcGRM	Man page Source code
convertBlockList	Man page Source code
cumsumPos	Man page Source code
design.Z	Man page Source code
eigen_out	Source code
estNetwork	Man page Source code
estPhylo	Man page Source code
genesetmap	Man page Source code
genetrait	Man page Source code
hess_func_out	Source code
is.diag	Man page Source code
llik_ML	Source code
llik_REML	Source code
llik_out	Source code
make.full	Man page Source code
manhattan	Man page Source code
manhattan.plus	Man page Source code
manhattan2	Man page Source code
manhattan3	Man page Source code
ml_est_out	Source code
ml_one_step	Source code
modify.data	Man page Source code
parallel.compute	Man page Source code
plotHaploNetwork	Man page Source code
plotPhyloTree	Man page Source code
qq	Man page Source code
score.calc	Man page Source code
score.calc.LR	Man page Source code
score.calc.LR.MC	Man page Source code
score.calc.LR.int	Man page Source code
score.calc.LR.int.MC	Man page Source code
score.calc.MC	Man page Source code
score.calc.epistasis.LR	Man page Source code
score.calc.epistasis.LR.MC	Man page Source code
score.calc.epistasis.score	Man page Source code
score.calc.epistasis.score.MC	Man page Source code
score.calc.int	Man page Source code
score.calc.int.MC	Man page Source code
score.calc.score	Man page Source code
score.calc.score.MC	Man page Source code
score.cpp	Man page Source code
score.linker.cpp	Man page Source code
score_fisher	Source code
score_fisher_linker	Source code
score_fisher_linker_diag	Source code
score_func_out	Source code
score_l1	Source code
score_l1_linker	Source code
score_l1_linker_diag	Source code
spectralG.cpp	Man page Source code
spectralG_cholesky	Source code
spectralG_eigen	Source code
welcome_to_RGWAS	Man page Source code