Files in RAINBOWR
Genome-Wide Association Study with SNP-Set Methods
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
LICENSE
R/RcppExports.R
R/functions_for_RGWAS.R
R/Rice_geno_score.R
R/RGWAS.normal.R
R/Rice_haplo_block.R
R/RGWAS.multisnp.interaction.R
R/RGWAS.normal.interaction.R
R/Rice_pheno.R
R/RGWAS.multisnp.R
R/EMM_functions_cpp.R
R/RGWAS.epistasis.R
R/other_useful_functions.R
R/RGWAS.menu.R
R/RGWAS.twostep.epi.R
R/SS_gwas.R
R/RGWAS.twostep.R
R/genetrait.R
R/Rice_geno_map.R
R/RAINBOWR.R
R/Rice_Zhao_etal.R
R/examples/EM3.linker.cpp_example.R
R/examples/RGWAS.normal_example.R
R/examples/RGWAS.multisnp_example.R
R/examples/EMM.cpp_example.R
R/examples/EM3.general_example.R
R/examples/RGWAS.twostep.epi_example.R
R/examples/RGWAS.twostep_example.R
R/examples/RGWAS.normal.interaction_example.R
R/examples/RGWAS.multisnp.interaction_example.R
R/examples/EM3.cpp_example.R
R/examples/RGWAS.epistasis_example.R
src/RcppExports.cpp
src/EMM_functions.cpp
inst/CITATION
inst/doc/RAINBOWR.Rmd
inst/doc/RAINBOWR.html
inst/doc/RAINBOWR.R
build/vignette.rds
vignettes/RAINBOWR.Rmd
data/datalist
data/Rice_Zhao_etal.rda
man/manhattan2.Rd
man/RGWAS.menu.Rd
man/RGWAS.twostep.epi.Rd
man/score.linker.cpp.Rd
man/Rice_pheno.Rd
man/genesetmap.Rd
man/score.calc.Rd
man/score.calc.int.Rd
man/EM3.op.Rd
man/Rice_haplo_block.Rd
man/plotPhyloTree.Rd
man/EMM.cpp.Rd
man/Rice_geno_map.Rd
man/manhattan.Rd
man/RGWAS.twostep.Rd
man/welcome_to_RGWAS.Rd
man/calcGRM.Rd
man/EMM1.cpp.Rd
man/genetrait.Rd
man/CalcThreshold.Rd
man/score.calc.LR.Rd
man/spectralG.cpp.Rd
man/estPhylo.Rd
man/adjustGRM.Rd
man/is.diag.Rd
man/plotHaploNetwork.Rd
man/score.calc.epistasis.LR.MC.Rd
man/Rice_geno_score.Rd
man/RGWAS.normal.interaction.Rd
man/qq.Rd
man/EMM2.cpp.Rd
man/EM3.cpp.Rd
man/convertBlockList.Rd
man/MAF.cut.Rd
man/score.calc.LR.MC.Rd
man/score.calc.int.MC.Rd
man/parallel.compute.Rd
man/score.calc.MC.Rd
man/EM3.general.Rd
man/See.Rd
man/Rice_Zhao_etal.Rd
man/score.calc.score.MC.Rd
man/RGWAS.multisnp.Rd
man/design.Z.Rd
man/manhattan3.Rd
man/estNetwork.Rd
man/RAINBOWR.Rd
man/score.calc.epistasis.LR.Rd
man/cumsumPos.Rd
man/RGWAS.normal.Rd
man/make.full.Rd
man/score.calc.LR.int.Rd
man/score.calc.score.Rd
man/SS_gwas.Rd
man/score.calc.LR.int.MC.Rd
man/EM3.linker.cpp.Rd
man/modify.data.Rd
man/score.calc.epistasis.score.Rd
man/score.calc.epistasis.score.MC.Rd
man/RGWAS.epistasis.Rd
man/RGWAS.multisnp.interaction.Rd
man/score.cpp.Rd
man/manhattan.plus.Rd
