API for RNeXML
Semantically Rich I/O for the 'NeXML' Format
| Global functions | |
|---|---|
| .cacheNextMethod | Source code |
| .callGeneric | Man page Source code |
| .classForSig | Source code |
| .methodWithNext | Man page Source code |
| .sigLabel | Man page Source code |
| Annotated-class | Man page |
| New | Man page Source code |
| `$.tbl_df` | Source code |
| add_basic_meta | Man page Source code |
| add_char | Source code |
| add_character_nodes | Source code |
| add_characters | Man page Source code |
| add_meta | Man page Source code |
| add_namespaces | Man page Source code |
| add_otu | Source code |
| add_rows | Source code |
| add_states | Source code |
| add_trees | Man page Source code |
| add_trees_block | Source code |
| attributes_to_row | Source code |
| c,ListOfmeta-method | Man page |
| c,meta-method | Man page |
| c,nexml-method | Man page |
| c-ListOfmeta | Man page |
| c-meta | Man page |
| character_to_label | Source code |
| characters_to_simmap | Source code |
| charzero_as_empty | Man page Source code |
| closure | Source code |
| coalesce_ | Man page Source code |
| dummy | Source code |
| expand_prefix | Man page Source code |
| extract_character_matrix | Source code |
| findNextMethod | Man page Source code |
| flatten_multiphylo | Man page Source code |
| format_characters | Source code |
| fromPhylo | Source code |
| get_all_meta | Man page Source code |
| get_by_id | Source code |
| get_char_maps | Source code |
| get_characters | Man page Source code |
| get_characters_list | Man page Source code |
| get_citation | Man page Source code |
| get_flat_trees | Man page Source code |
| get_ids | Source code |
| get_item | Man page |
| get_level | Man page Source code |
| get_license | Man page Source code |
| get_meta | Man page Source code |
| get_metadata | Man page Source code |
| get_metadata_values | Man page Source code |
| get_namespaces | Man page Source code |
| get_otu | Man page |
| get_otu_maps | Source code |
| get_otus_list | Man page |
| get_rdf | Man page Source code |
| get_state_maps | Source code |
| get_taxa | Man page Source code |
| get_taxa_list | Man page Source code |
| get_taxa_meta | Man page Source code |
| get_taxa_meta_list | Man page Source code |
| get_trees | Man page Source code |
| get_trees_list | Man page Source code |
| idRefColName | Source code |
| lcapply | Man page Source code |
| map_chars_to_label | Source code |
| map_state_to_symbol | Source code |
| map_states_to_symbols | Source code |
| meta | Man page Source code |
| missing_as_na | Source code |
| na_symbol_to_state | Source code |
| name_by_id | Source code |
| name_by_id_or_label | Source code |
| new_otus_block | Source code |
| nexml | Man page |
| nexml-class | Man page |
| nexml.cell | Man page Source code |
| nexml.char | Man page Source code |
| nexml.characters | Man page Source code |
| nexml.edge | Man page Source code |
| nexml.format | Man page Source code |
| nexml.matrix | Man page Source code |
| nexml.member | Man page Source code |
| nexml.meta | Man page |
| nexml.meta_ | Man page |
| nexml.node | Man page Source code |
| nexml.otu | Man page Source code |
| nexml.otus | Man page Source code |
| nexml.polymorphic_states | Man page Source code |
| nexml.row | Man page Source code |
| nexml.seq | Man page Source code |
| nexml.state | Man page Source code |
| nexml.states | Man page Source code |
| nexml.tree | Man page Source code |
| nexml.trees | Man page Source code |
| nexml.uncertain_state | Man page Source code |
| nexml.uncertain_states | Man page Source code |
| nexmlTree | Source code |
| nexml_add | Man page Source code |
| nexml_citation | Source code |
| nexml_figshare | Man page Source code |
| nexml_get | Man page Source code |
| nexml_id | Source code |
| nexml_publish | Man page Source code |
| nexml_read | Man page Source code |
| nexml_read.XMLInternalDocument | Man page Source code |
| nexml_read.XMLInternalNode | Man page Source code |
| nexml_read.character | Man page Source code |
| nexml_schema_validate | Source code |
| nexml_to_simmap | Man page Source code |
| nexml_validate | Man page Source code |
| nexml_write | Man page Source code |
| node_id | Source code |
| nodelist_to_df | Source code |
| optional_labels | Source code |
| otu_list | Source code |
| otu_to_label | Source code |
| read.nexml | Man page |
| recursion | Source code |
| reset_id_counter | Man page Source code |
| reverse_map | Source code |
| simmap_edge_annotations | Source code |
| simmap_to_nexml | Man page Source code |
| slot,ResourceMeta-method | Man page |
| slot-ResourceMeta | Man page |
| slot<-,ResourceMeta-method | Man page |
| split_by_class | Source code |
| standardize_phylo_list | Source code |
| state_to_symbol | Source code |
| summary,nexml-method | Man page |
| summary.nexml | Man page |
| taxize_nexml | Man page Source code |
| toPhylo | Man page Source code |
| tree_to_simmap | Source code |
| unique_ids | Source code |
| write.nexml | Man page |
