ReporterScore

In ReporterScore: Generalized Reporter Score-Based Enrichment Analysis for Omics Data

knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>"
)

library(ReporterScore)

'ReporterScore'

Generalized Reporter Score-based Enrichment Analysis for Omics Data

Citation

To cite 'ReporterScore' in publications use:

C. Peng, Q. Chen, S. Tan, X. Shen, C. Jiang, Generalized Reporter Score-based Enrichment Analysis for Omics Data. Briefings in Bioinformatics (2024). https://doi.org/10.1093/bib/bbae116.

Please go to https://github.com/Asa12138/ReporterScore for more details.

Install

if (!require("devtools")) install.packages("devtools")
devtools::install_github("Asa12138/pcutils")
devtools::install_github("Asa12138/ReporterScore")
library(ReporterScore)

Need helps?

If you have any questions/issues, please visit github issue tracker.

Session information

Here is the output of sessionInfo() on the system on which this document was compiled:

sessionInfo()

Reference

1. Patil, K. R. & Nielsen, J. Uncovering transcriptional regulation of metabolism by using metabolic network topology. Proc Natl Acad Sci U S A 102, 2685--2689 (2005).

2. L. Liu, R. Zhu, D. Wu, Misuse of reporter score in microbial enrichment analysis. iMeta. 2, e95 (2023).

3. https://github.com/wangpeng407/ReporterScore

ReporterScore documentation built on June 25, 2024, 9:06 a.m.