plot_enrich_res: Plot enrich_res

In ReporterScore: Generalized Reporter Score-Based Enrichment Analysis for Omics Data

Plot enrich_res

Description

Plot enrich_res

Plot enrich_res

Usage

plot_enrich_res(
  enrich_res,
  mode = 1,
  padj_threshold = 0.05,
  show_ID = FALSE,
  Pathway_description = TRUE,
  facet_level = FALSE,
  facet_anno = NULL,
  str_width = 50,
  facet_str_width = 15,
  ...
)

## S3 method for class 'enrich_res'
plot(
  x,
  mode = 1,
  padj_threshold = 0.05,
  show_ID = FALSE,
  Pathway_description = TRUE,
  facet_level = FALSE,
  facet_anno = NULL,
  str_width = 50,
  facet_str_width = 15,
  ...
)

Arguments

enrich_res	enrich_res object
mode	plot style: 1~2
padj_threshold	p.adjust threshold
show_ID	show pathway id
Pathway_description	show KO description rather than KO id.
facet_level	facet plot if the type is "pathway" or "module"
facet_anno	annotation table for facet, two columns, first is level summary, second is pathway id.
str_width	default: 50
facet_str_width	str width for facet label
...	add
x	enrich_res object

Value

ggplot

ggplot

See Also

Other common_enrich: KO_enrich(), KO_fisher(), KO_gsa(), KO_gsea(), KO_gsva(), KO_padog(), KO_safe(), KO_sea()

ReporterScore documentation built on Sept. 11, 2024, 6:44 p.m.