custom_modulelist: Build a custom modulelist

In ReporterScore: Generalized Reporter Score-Based Enrichment Analysis for Omics Data

Build a custom modulelist

Description

Build a custom modulelist

Transform a modulelist to a list

Usage

custom_modulelist(pathway2ko, pathway2desc = NULL, verbose = TRUE)

transform_modulelist(mymodulelist, mode = 1)

Arguments

pathway2ko	user input annotation of Pathway to KO mapping, a data.frame of 2 column with pathway and ko.
pathway2desc	user input of Pathway TO Description mapping, a data.frame of 2 column with pathway and description.
verbose	verbose
mymodulelist	mymodulelist
mode	1~2

Value

a custom modulelist

modulelist

See Also

Other modulelist: custom_modulelist_from_org(), get_features()

Other modulelist: custom_modulelist_from_org(), get_features()

Examples

mydat <- data.frame(pathway = paste0("PATHWAY", rep(seq_len(2), each = 5)), ko = paste0("K", 1:10))
mymodulelist <- custom_modulelist(mydat)
print(mymodulelist)
transform_modulelist(mymodulelist)

ReporterScore documentation built on Sept. 11, 2024, 6:44 p.m.