load_htable: Load the specific table (from 'KEGG')

In ReporterScore: Generalized Reporter Score-Based Enrichment Analysis for Omics Data

Load the specific table (from 'KEGG')

Description

Load the specific table (from 'KEGG')

Load the KOlist (from 'KEGG')

Load the CPDlist (from 'KEGG')

Load the KO description (from 'KEGG')

Load the KO_htable (from 'KEGG')

Load the Pathway_htable (from 'KEGG')

Load the Module_htable (from 'KEGG')

Load the Compound_htable (from 'KEGG')

Load the pathway information for an organism (from 'KEGG')

Usage

load_htable(type, verbose = TRUE)

load_KOlist(verbose = TRUE)

load_CPDlist(verbose = TRUE)

load_KO_desc(verbose = TRUE)

load_KO_htable(verbose = TRUE)

load_Pathway_htable(verbose = TRUE)

load_Module_htable(verbose = TRUE)

load_Compound_htable(verbose = TRUE)

load_org_pathway(org = "hsa", verbose = TRUE)

Arguments

type	"ko", "module", "pathway", "compound" ...
verbose	logical
org	kegg organism, listed in https://www.genome.jp/kegg/catalog/org_list.html, default, "hsa"

Value

KO_htable

KOlist

CPDlist

KO description

KO_htable

Pathway_htable

Module_htable

Compound_htable

KOlist

Examples

Pathway_htable <- load_htable("pathway")
head(Pathway_htable)

ReporterScore documentation built on Sept. 11, 2024, 6:44 p.m.