gene2ko: Transfer gene symbol table to KO table

In ReporterScore: Generalized Reporter Score-Based Enrichment Analysis for Omics Data

Transfer gene symbol table to KO table

Description

You can use 'clusterProfiler::bitr()' to transfer your table from other gene_id to gene_symbol.

Usage

gene2ko(genedf, org = "hsa")

Arguments

genedf	,rowname is gene symbol (e.g. PFKM), colnames is samples
org	kegg organism, listed in 'https://www.genome.jp/kegg/catalog/org_list.html', default, 'hsa'

Value

kodf

Examples

data("genedf")
KOdf <- gene2ko(genedf, org = "hsa")

ReporterScore documentation built on Sept. 11, 2024, 6:44 p.m.