plot_report: Plot the reporter_res

In ReporterScore: Generalized Reporter Score-Based Enrichment Analysis for Omics Data

Plot the reporter_res

Description

Plot the reporter_res

Usage

plot_report(
  reporter_res,
  rs_threshold = 1.64,
  mode = 1,
  y_text_size = 13,
  str_width = 100,
  show_ID = FALSE,
  Pathway_description = TRUE,
  facet_level = FALSE,
  facet_anno = NULL,
  facet_str_width = 15
)

Arguments

reporter_res	result of 'get_reporter_score' or 'reporter_score'
rs_threshold	plot threshold vector, default:1.64
mode	1~2 plot style.
y_text_size	y_text_size
str_width	str_width to wrap
show_ID	show pathway id
Pathway_description	show KO description rather than KO id.
facet_level	facet plot if the type is "pathway" or "module"
facet_anno	annotation table for facet, two columns, first is level summary, second is pathway id.
facet_str_width	str width for facet label

Value

ggplot

Examples

data("reporter_score_res")
plot_report(reporter_score_res, rs_threshold = c(2.5, -2.5), y_text_size = 10, str_width = 40)

ReporterScore documentation built on Sept. 11, 2024, 6:44 p.m.