c_means: Test the proper clusters k for c_means

In ReporterScore: Generalized Reporter Score-Based Enrichment Analysis for Omics Data

Test the proper clusters k for c_means

Description

Test the proper clusters k for c_means

C-means cluster

Usage

cm_test_k(otu_group, filter_var, fast = TRUE)

c_means(otu_group, k_num, filter_var)

Arguments

otu_group	standardize data
filter_var	filter the highest var
fast	whether do the gap_stat?
k_num	cluster number

Value

ggplot

ggplot

See Also

Other C_means: RSA_by_cm()

Examples

if (requireNamespace("e1071") && requireNamespace("factoextra")) {
  data(otutab, package = "pcutils")
  pcutils::hebing(otutab, metadata$Group) -> otu_group
  cm_test_k(otu_group, filter_var = 0.7)
  cm_res <- c_means(otu_group, k_num = 3, filter_var = 0.7)
  plot(cm_res, 0.8)
}

ReporterScore documentation built on Sept. 11, 2024, 6:44 p.m.