KO_gsva: Perform Gene Set Variation Analysis

In ReporterScore: Generalized Reporter Score-Based Enrichment Analysis for Omics Data

Perform Gene Set Variation Analysis

Description

Perform Gene Set Variation Analysis

Usage

KO_gsva(
  reporter_res,
  verbose = TRUE,
  method = "wilcox.test",
  p.adjust.method = "BH",
  ...
)

Arguments

reporter_res	reporter_res
verbose	verbose
method	see ko.test
p.adjust.method	p.adjust.method
...	additional parameters to gsva

Value

enrich_res

See Also

Other common_enrich: KO_enrich(), KO_fisher(), KO_gsa(), KO_gsea(), KO_padog(), KO_safe(), KO_sea(), plot_enrich_res()

Examples

## use `gsva` from the `GSVA` package.
if (requireNamespace("GSVA")) {
  data("reporter_score_res")
  gsva_res <- KO_gsva(reporter_score_res, p.adjust.method = "none")
}

ReporterScore documentation built on Sept. 11, 2024, 6:44 p.m.